F03844

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03844

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03844

Determination of introduced cDNA(s)

  • RAFL06-08-N13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-N13 - Resource: pda02911

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-08-N13 - full reading 
    ATACTTCAGT CTAGAGCCGC GCAAGAAGAC GATTCTCTCT CTTGAGTTGA 
    AGAAATGAAG CACAACAATG TTATCCCCAA TGGTCACTTC AAAAAGCACT 
    GGCAGAATTA TGTCAAGACA TGGTTCAACC AGCCTGCCAG GAAAACCAGA 
    AGAAGAATTG CGAGGCAAAA GAAGGCTGTG AAGATCTTCC CTCGTCCAAC 
    TTCTGGACCT CTCCGCCCTG TTGTGCATGG TCAGACTCTT AAGTACAACA 
    TGAAGGTCAG AACCGGTAAA GGATTCACTC TTGAAGAGCT CAAGGCTGCT 
    GGTATCCCAA AGAAGTTGGC GCCTACAATT GGTATTGCTG TTGACCATCG 
    TCGCAAGAAC CGATCTTTGG AGGGTCTTCA AACAAATGTC CAGAGGCTGA 
    AAACCTACAA GACCAAGTTA GTCATTTTCC CGCGTCGTGC CCGCAAGGTC 
    AAGGCTGGTG ACTCTACACC AGAAGAGTTG GCTAATGCTA CCCAAGTTCA 
    AGGAGACTAC TTGCCTATTG TACGTGAGAA GCCTACCATG GAACTCGTCA 
    AGCTGACTTC AGAAATGAAG TCTTTCAAGG CTTTTGACAA GATACGCCTT 
    GAGCGCACTA ACAAGAGGCA TGCCGGAGCT AGAGCCAAGA GGGCCGCAGA 
    GGCTGAGAAA GAAGAGAAGA AGTGAGGTCG TTCTTCTTAG GTAGAAGAAA 
    CTTTTATCTT ATCAACTTTT GGAACTGAAT TTTGTGTATC AGACTGTCTT 
    TTCTTTCATC AGTTTTTATC CTTAAATCTT TGATTTTGCT GCTACCTTGC 
    TTCTCTTGAT TTATGGAAAA GACCGTATCT CACATCTCTA CTTGCTATAG 
    TTTCCTCCT

    Gene models with high sequence identity

    1. AT3G49010.2 [+] show detail - breast basic conserved 1
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L13e, conserved site 0
    HMMPanther Ribosomal protein L13e 9.9e-129
    HMMPfam Ribosomal protein L13e 4.7e-94

    See the detailed result >

    AT3G49010.2

    Model type
    Protein coding
    Short Description
    breast basic conserved 1
    Curator Summary
    Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).
    Computational Description
    breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 738 Blast hits to 738 proteins in 281 species: Archae - 1; Bacteria - 0; Metazoa - 292; Fungi - 166; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR