F04407

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04407

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F04407

Determination of introduced cDNA(s)

RAFL09-38-M02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-38-M02 - Resource: pda06193

full reading [+] show sequence

GACTGCGAAT GAAGTTTAAT GGCGACTAGA TCGCCTTATA AGAGACAAAC 
GAAGCGATCC ATGATTCAGT CTCTTCCAGC TTCTTCTTCT GCATCATCTC 
GCCGCCGATT CATTTCTCGG AAGAGGTTCG CGATGATGAT TCCTCTTGCT 
CTCCTCTCCG GCGCCGTTTT CCTATTCTTT ATGCCATTCA ATAGCTGGGG 
CCAATCATCT GGTTCTTCTC TGGATCTCTC CCATAGGATC AATGAAATTG 
AAGTAGTTGC TGAGTTTCCT CATGATCCGG ACGCCTTTAC TCAGGGTCTT 
CTTTATGCGG GAAACGATAC ACTGTTCGAA TCCACTGGTC TATACGGGAA 
GTCTTCAGTG AGGAAAGTGG ATCTACGAAC AGGAAAGGTT GAAATTCTTG 
AAAAAATGGA CAATACATAT TTTGGAGAGG GTTTAACACT CCTTGGAGAA 
AGGCTCTTTC AAGTCGCATG GTTGACAAAC ACGGGTTTCA CATATGACCT 
TCGCAACTTA AGTAAAGTAA AACCATTTAA ACATCATATG AAAGATGGAT 
GGGGACTGGC TACCGATGGA AAAGCGTTAT TTGGAAGTGA TGGCACTTCT 
ACATTATATC GGATGGACCC TCAAACAATG AAAGTTACTG ATAAGCATAT 
AGTCAGATAT AATGGCCGTG AGGTACGTTA CCTTAATGAG CTCGAGTACA 
TAAACAACGA AGTTTGGGCA AATGTGTGGC AGTCTGATTG TATTGCTAGA 
ATTTCACCCA AGGACGGATC TCTGCTTGGA TGGATACTGC TTTCAAAATT 
AAGTCGGGGA TTGCTGAAAT CTGGACATAG GGGTATTGAT GTTTTGAATG 
GCATAGCATG GGACAGTGAC AAGCAACGCC TCTTTGGTAA TAAATCTTGT 
TATCATCCCC TCTAGGCTTG ATTACTCGAC GTCGCCTCAT AGTCACAACA 
TTTTGTGTCT CCATCAATTT TGTGTCTCGA TCATTTGTTT TGCAGTAACG 
GGGAAACTGT GGCCAAAGCT GTACCAAATC AAGCTAAAAC AAGCATCAGC 
AAAGAGCGGA AATTATATCG AGCAACAATG CTTGGTATGA AAATATTGCG 
CTTGGTAATG GTTAGAATGT ATACTGGCTA TAATTTACCA TAATTTCTGA 
ACATTAGCAT TTAGCAAACT TCAATGATTG AAGATGAGAA CCAAAAAAAA 
AAAAAAAA

Gene models with high sequence identity

AT4G25720.2 [+] show detail - glutaminyl cyclase
E-value: 0; Score: 99.92

InterPro Scan Digest

Program	Description	E-value
superfamily	Nitrous oxide reductase, N-terminal	3.5e-13
HMMPfam	Glutamine cyclotransferase	1.2e-62

See the detailed result >

AT4G25720.2

Model type: Protein coding
Short Description: glutaminyl cyclase
Curator Summary: This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus, but, based on in vitro assays (using a truncated form of the protein that lacks a signal peptide), the protein encoded by this gene model does not have enzymatic activity (Schilling 2007).
Computational Description: glutaminyl cyclase (QC); FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity, catalytic activity; INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788), Nitrous oxide reductase, N-terminal (InterPro:IPR011045); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

RAFL06-13-O15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-13-O15 - Resource: pda09409

full reading [+] show sequence

AACCAACAAG TTCTCCTTTC TACCCATTTC GTCTCCTTCA TTTTGACGTT 
TTCTTTAGAT CTGTTAATAA TCCCATCCAT GGCTTGGTCT AGTCACTAGT 
GGTGTTATCT CTCTGTGTGG AATAAAAAGC AAGGTTTTTT AATCACTTGG 
ATTGTTTTAA GATATGGCAA CTTTGAACCC TTTTGATTTG TTGGATGATG 
ATGCTGAGGA TCCAAGCCAG CTCGCTGTTG CCATCGAGAA GATTGATAAG 
TCCAAGAAAT CTGGACAGGT TTCGAGCTTG CCTGCTAAGT CAGCTCCTAA 
GCTTCCATCG AAGCCACTTC CTCCTGCTCA AGCCGTGAGA GAGGCAAGGA 
GTGATGCTCC ACGTGGTGGT GGAGGCCGTG GAGGATTTAA CCGTGGTCGT 
GGTGGTTACA ACCGTGATGA TGGTAACAAT GGATATTCAG GGGGATACAC 
TAAACCCTCA GGTGAAGGAG ATGTTTCAAA GTCTTCTTAC GAGAGGCGTG 
GCGGTGGTGG TGCTCCTCGT GGTTCCTTCC GTGGTGAAGG TGGTGGACCT 
GGTGGTGGTC GTCGTGGTGG ATTCAGCAAT GAGGGTGGTG ATGGGGAACG 
TCCTCGAAGG GCCTTTGAGC GTCGTAGTGG AACTGGCAGA GGGAGTGACT 
TCAAGCGTGA CGGATCTGGT CGTGGGAATT GGGGAACTCC AGGGGAAGAG 
ATAGCTGCTG AGACTGAAGC AGTAGCTGGT GTTGAGACTG AGAAGGATGT 
TGGAGAGAAG CCAGCTGTTG ATGATGTAGC TGCTGATGCT AACAAGGAGG 
ATACTGTTGT TGAGGAGAAA GAGCCTGAGG ATAAGGAAAT GACTCTTGAT 
GAGTATGAGA AAATACTCGA GGAGAAGAAA AAGGCACTTC AATCATTAAC 
TACCTCTGAG AGGAAAGTTG ATACGAAAGT GTTTGAATCA ATGCAACAAC 
TGTCAAACAA GAAGTCTAAT GATGAAATCT TCATCAAGCT GGGTTCTGAT 
AAGGACAAAC GCAAAGATGA CAAAGAAGAG AAGGCTAAGA AGGCTGTGAG 
CATCAATGAG TTTCTGAAGC CAGCAGAGGG TGGGAACTAC TACCGAGGAG 
GTCGTGGTGG CCGTGGACGT GGTGGTCGTG GCCGTGGAGG TGTTTCTAGT 
GGCGAATCTG GTGGTTACCG TAATGAAGCT GCACCGGCAA TTGGAGATGC 
TGCTCAGTTC CCATCTCTTG GGGGCAAGTA AGATCCATCC ATGATAACGT 
CCACACTCGT GCATCCTCCT TTAGGATTTT GTGCGAGGAT TTACTGTTTA 
CTGGTCTCTC GTTGTCAGAT GTAAATAATT AGGTGTCGTC GTCAGTTTTT 
AGATTTTATG CAAAACTTTA CACTTGTTGG TGTTCTTTAC TTTTGAAACA 
GTACACTCTT CTTAATTTTA CCATTTTACT C

Gene models with high sequence identity

AT4G16830.1 [+] show detail - Hyaluronan / mRNA binding family
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	NUCLEAR RNA BINDING PROTEIN A-LIKE PROTEIN	8.5e-249
HMMPanther	HYALURONIC ACID-BINDING PROTEIN 4	8.5e-249
Coil	coiled-coil	0
HMMPfam	Hyaluronan/mRNA binding protein	7.1e-28
HMMPfam	Stm1, N-terminal	9.3e-10

See the detailed result >

AT4G16830.1

Model type: Protein coding
Short Description: Hyaluronan / mRNA binding family
Computational Description: Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 23191 Blast hits to 11934 proteins in 1060 species: Archae - 16; Bacteria - 7670; Metazoa - 7282; Fungi - 1721; Plants - 3144; Viruses - 315; Other Eukaryotes - 3043 (source: NCBI BLink).
Link: InterPro Scan - TAIR