F04641

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04641

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::deep red

Original: F04641

Determination of introduced cDNA(s)

RAFL15-32-P20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-32-P20 - Resource: pda13016

full reading [+] show sequence

GTTTTTTCTC TGCTCATTTA CTATAACCAA CAAGGTCTCT TCTCTTCTCT 
TCTCCTCTCT GCATCATTTT GATCCGATTC GATGGCTGCT CCACCTGCTA 
GAGCTAGAGC CGATTATGAT TATCTCATTA AGCTTCTTCT CATCGGTGAT 
AGCGGTGTTG GTAAAAGTTG TTTGCTTCTA AGGTTCTCTG ATGGCTCTTT 
CACCACTAGC TTCATCACTA CCATTGGTAT TGATTTTAAG ATAAGAACTA 
TTGAGCTTGA TGGCAAACGT ATCAAGCTTC AGATTTGGGA CACTGCTGGT 
CAAGAACGTT TTCGAACCAT CACCACTGCT TATTACCGCG GGGCAATGGG 
GATTTTACTG GTGTATGATG TCACAGACGA GTCATCCTTC AACAACATTA 
GAAACTGGAT TCGTAATATT GAACAGCACG CTTCAGATAA TGTCAACAAA 
ATCTTGGTAG GAAACAAAGC TGATATGGAC GAGAGCAAGA GGGCTGTGCC 
AAAATCAAAG GGTCAAGCAC TTGCTGACGA ATATGGAATC AAGTTCTTTG 
AAACAAGTGC CAAAACTAAT CTGAATGTGG AAGAAGTTTT CTTCTCCATA 
GCAAAGGACA TAAAGCAGAG ACTCGCTGAT ACTGACTCTA GAGCAGAGCC 
TGCAACGATC AAGATCAGCC AAACAGACCA GGCTGCTGGA GCCGGACAGG 
CCACACAGAA GTCTGCATGC TGTGGAAGTT AATCAGTCCC AAAAGGCTCC 
AAAGTTGAAG TGAAGTGAAA AACAGATTTA TCTTGGGGTG CTTTTGTATT 
TTTTTTTCTT TTGATTATTT GTTCTTATTT GACTTCTTCT AGTTTGTTCA 
TGAGGGTAAT AGAATCTTTT AAGAAATTTT TCCTTCTCAG ACAGATTCGA 
TGTCACAGAA GCTGAATCTG TGACTGAATT GTTAATCTTT TACGCATAAC 
TCTTCAAGTC TCTTCATAAA AAAAAAAAAA AAA

Gene models with high sequence identity

AT5G59840.1 [+] show detail - Ras-related small GTP-binding family protein
E-value: 0; Score: 99.90

InterPro Scan Digest

Program	Description	E-value
superfamily	P-loop containing nucleoside triphosphate hyd	5.1e-68
ProfileScan	Small GTPase	38.149
HMMSmart	ADP-ribosylation factor	0.0026
HMMSmart	Ras small GTPase, Rab type	9.2e-107
HMMSmart	Ras small GTPase, Ras type	1.5e-34
HMMSmart	Small GTPase, Rho type	4.3e-14
HMMSmart	Ran GTPase	2.3e-10
Gene3D	no description	3.4e-68
HMMTigr	Small GTP-binding protein	6.7e-31
HMMPanther	RAS-LIKE GTP-BINDING PROTEIN	5.5e-103
HMMPanther	RAS-RELATED GTPASE	5.5e-103
HMMPfam	Ras	2.6e-66
FPrintScan	Ras GTPase	1.2e-46
FPrintScan	Ras GTPase	1.2e-46
FPrintScan	Ras GTPase	1.2e-46
FPrintScan	Ras GTPase	1.2e-46
FPrintScan	Ras GTPase	1.2e-46

See the detailed result >

AT5G59840.1

Model type: Protein coding
Short Description: Ras-related small GTP-binding family protein
Computational Description: Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8A (TAIR:AT3G46060.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR