F05606

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05606

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05606

Determination of introduced cDNA(s)

  • RAFL06-79-C05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-79-C05 - Resource: pda03756

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-79-C05 - full reading 
    ATTCATTCAC ATTACACTGT AGTTTTACCT GTGAATTCTA TAAAAATTCT 
    ACTCTACTTG TAATCTGGTC TAATCTAAAC ATAACTTGTT TCAGGTTTTA 
    GATTCTTGCA CTCTTGGAGG TTGAGCTTAG TTCGACATGA AGGTCTTTAT 
    CTAATCTCCA CTCGCTGGCA ATGAAGATGA GAGTGGAAAC CGCACTTGCG 
    ATCCTTTTGG TTCTCATATC AATTCAACAA TGTTATGGAG GTGTAAGCAA 
    CTATACATGT ACGTGTTTCT CTTCGGGCAA TCGAAGTGAT ATCCTGGAAT 
    CTAACTGTTC CACATCATGT AATTGCAGAC CAGACAGAGA TCAATGGGTA 
    TGTTTGTGTC CTGCAAATGG ATTTCCGGTT ATAGCCATTG GTGGTTCAAA 
    TTCGTCATGC TTCACTTCAT GCAACTGCTC TGCTGGTGCT ACAAAATCTT 
    CAAAGAAGCA ATATTTATCG AGGAAACTCG TTATAGTTAT ACTACTCTTC 
    TGCGGTGTAC TCATTTCACT AGCATTCCTT GCCTCTATGA TTTGTTACAT 
    TTGTAGAAAG GACAAGTTTT CTGGACAAAC CCCTTCAGTC TCTTCAGATA 
    GAGAATCTAG CTGGCATAGC TCTGCTAACT TAATAAACCG TAAAAGCTCG 
    GTTTCACAAT CGAAAATTAG CATCAGCTCC TCAGTGGCAG GTTGCTTCTT 
    TCAGAATGCT TCTTTGTTTT GTGTGAGCAA ACCTGAAACA ATCCATGGAG 
    CTATCTTTCA GTTCTCATAC ACAGAATTAG AGCAAGCAAC CAATAAATTC 
    TCAAGTAACA GTGTAATAGG ACATGGAGGA AGTAGTTGTG TTTACCGTGG 
    ACAGCTCAAA GACGGTAAAA CCGCTGCGAT CAAACGTCTA AATACCCCTA 
    AAGGAGACGA CACTGACACT CTATTCTCAA CAGAGGTAGA GTTATTATCA 
    AGACTCCATC ATTACCATGT GGTACCGTTA ATTGGATATT GTTCGGAGTT 
    TCATGGCAAA CATGCAGAGA GGCTTCTGGT TTTTGAGTAC ATGTCTTATG 
    GAAGTCTAAG AGATTGCTTA GATGGAGAGT TAGGGGAGAA AATGACATGG 
    AACATCCGAA TCTCTGTCGC TCTTGGAGCT GCAAGAGGAC TTGAGTATCT 
    TCATGAAGCT GCCGCTCCAA GAATCTTACA CCGAGATGTG AAATCCACAA 
    ATATTCTCCT TGATGAGAAT TGGCATGCAA AAATAACAGA TCTTGGGATG 
    GCTAAGTGTT TGAGTAGCGA TGGTTTACAA AGCGGTTCAA GCTCTCCAAC 
    CACAGGACTA CAAGGAACAT TTGGCTACTT TGCACCTGAA TACGCAATTG 
    CAGGATGTGC TTCACAGATG TCAGATGTTT TCAGCTTTGG TGTTGTTCTA 
    CTCGAGCTTA TAACCGGAAG GAAACCGATA CAGAAACCAA GCAACAACAA 
    AGGCGAAGAA AGCCTAGTTA TATGGGCTGT GCCACGGTTA CAAGATAGTA 
    AGCGGGTGAT CGAGGAACTG CCTGATCCGC GGCTAAACGG GAAGTTTGCG 
    GAAGAAGAGA TGCAGATAAT GGCGTATCTT GCTAAAGAGT GTTTGCTTTT 
    GGATCCAGAA AGTAGACCAA CAATGAGAGA AGTTGTTCAG ATTCTTTCAA 
    CCATCACACC AGACACATCA TCCAGACGTA GAAATTTCCC CATTAATTAT 
    CTTTTCCAGA GTAACGAGAA GAAGAAAGAA AGCAAAGTGG GATGGTCAAG 
    AGGAGGGAGC AAGAGTGGAC AGGAAGAGGA AACAGTGGAT CTGACTGAGC 
    CACGGTTCGA GTCATTCTGC TTGCCGAATG TGAAGCCGGT CTTGCTTGAA 
    CCATCTGCAC ATATTTAAAA AGTAGATAGA AAAGCACAGA ACAAAAACTG 
    CCATTTCGCA CTGTGTAGAT AAAAAGCTCA CTCTGACGAG AGTGAAGCGT 
    TGAGACTTGA GAGTTTACTA CAAGTGAGAG TGTCAAGATT TGTTCTAAAC 
    TAGAGGACTT TTAATTGATA ATTTTAATAA ATATATTTAA CAAAATGTAC 
    ACAAGAGTTA TTATCCAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT2G28250.1 [+] show detail - Protein kinase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily Protein kinase-like domain 2.6e-75
    HMMPfam Serine/threonine-protein kinase-like domain 7.2e-47
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 6.2e-141
    Gene3D no description 2.9e-15
    Gene3D no description 1.1e-46
    ProfileScan Protein kinase, catalytic domain 36.697
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 2.7e-36
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.6e-20

    See the detailed result >

    AT2G28250.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    NCRK; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G10620.1); Has 107841 Blast hits to 106732 proteins in 3090 species: Archae - 127; Bacteria - 12810; Metazoa - 39123; Fungi - 9020; Plants - 31343; Viruses - 335; Other Eukaryotes - 15083 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR