F05725

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05725

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05725

Determination of introduced cDNA(s)

  • RAFL06-70-G08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-70-G08 - Resource: pda03343

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-70-G08 - full reading 
    CTCTCTCTCT CGATCGGATA ATATTTGAGC TTTGTGGTTG GAGGATCTGA 
    GTTAGTCATG TTCATGATCG ATTGGTTCTA TGGCGTTCTC GCTTCGTTAG 
    GGTTATGGCA GAAAGAGGCT AAGATCTTGT TTCTGGGACT CGATAATGCT 
    GGTAAAACCA CTCTGCTTCA CATGTTGAAA GACGAGAGAT TGGTACAGCA 
    TCAGCCTACG CAGCATCCAA CTTCTGAAGA ACTCAGCATT GGGAAAATCA 
    AGTTTAAGGC TTTTGATTTG GGTGGTCACC AGATTGCTCG CAGGGTCTGG 
    AAGGATTACT ATGCTAAGGT GGACGCTGTG GTCTACCTAG TTGATGCTTA 
    CGACAAAGAG AGATTTGCAG AATCAAAAAA GGAACTTGAT GCACTTCTCT 
    CAGACGAATC CCTAGCCAGC GTTCCATTCC TCATTCTAGG AAACAAGATA 
    GACATACCGT ATGCTGCATC AGAGGACGAG CTCCGTTACC ATCTCGGCCT 
    CTCCAACTTC ACTACAGGAA AGGGTAAAGT GAATCTAACG GATTCGAACG 
    TTAGGCCATT GGAGGTTTTC ATGTGCAGCA TTGTCAGGAA AATGGGTTAC 
    GGAGAAGGTT TCAAATGGGT TTCTCAATAC ATCAAGTAAG ACAAACACAC 
    GCTGTGTTAT TATTAAGCCG TAAGCTTGCT TCTATAAATC CTGTTTTTTG 
    TATCGTCTTG CTTCGTTTTT TCCTCTCTTT AATTGTGTTG TAAGAAAATG 
    TCTTAAACCG TACCTAGCTT TTTCTCGTTT GTCTGATCCT CGACTGGTTT 
    GTTCTTGTAG TGAATTTTTT ACACGTTTCG TAATTTATTC AAATAAGGGA 
    AGAAAAAAAG ATTAGATTAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 
    AAAAAAAAAA AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT4G02080.1 [+] show detail - secretion-associated RAS super family 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.3e-57
    HMMPfam ARF/SAR superfamily 2.4e-66
    HMMTigr Small GTP-binding protein 2.4e-11
    superfamily P-loop containing nucleoside triphosphate hyd 1.7e-42
    HMMSmart ADP-ribosylation factor 3.5e-18
    HMMSmart Small GTPase SAR1-type 1.5e-134
    FPrintScan ARF/SAR superfamily 7.7e-75
    FPrintScan ARF/SAR superfamily 7.7e-75
    FPrintScan ARF/SAR superfamily 7.7e-75
    FPrintScan ARF/SAR superfamily 7.7e-75
    FPrintScan ARF/SAR superfamily 7.7e-75
    HMMPanther Small GTPase SAR1-type 1e-129
    HMMPanther ARF/SAR superfamily 1e-129
    ProfileScan Small GTPase SAR1-type 30.492

    See the detailed result >

    AT4G02080.1

    Model type
    Protein coding
    Short Description
    secretion-associated RAS super family 2
    Curator Summary
    A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.
    Computational Description
    secretion-associated RAS super family 2 (SAR2); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT3G62560.1); Has 6784 Blast hits to 6782 proteins in 374 species: Archae - 2; Bacteria - 40; Metazoa - 3245; Fungi - 1245; Plants - 1081; Viruses - 0; Other Eukaryotes - 1171 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR