F06550

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06550

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06550

Determination of introduced cDNA(s)

  • RAFL06-74-J03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-J03 - Resource: pda03507

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-J03 - full reading 
    GTCAAAACCC CAAATATTAA AAAACTTATG TTTATTGCTC TCTCTCTCTG 
    TTTCTCACTA CTCTTACTAG ACTCCTCCAT AGCTAAGCTC CACCTACTAG 
    ATTAGCCTCC ACGCGCTTTT ATTATTACTA CTGCCACAGT GGCAAATCCA 
    CCTTCTTCCC TCTCATGGCC ACCACAACCA TCATCATCTT CAACACCTTT 
    CGCCGCCGTC TCAATCCCAC CTGATCACTC TTCCTCCTCC GTCGCCGCCG 
    TTGGAATCAG TACTACTCCA GACTACATGT TAGGTCTTCG AAACATCATT 
    CTCTTATCTC CACCACCGAC GCAGATAACA CGGCCATCTC TTCCTCCGGT 
    AAACTTCGCG GCGGTGGAAG ACAACAACAC AGTTGGAGAG AAAGTATGCA 
    GAGACTGTGG AAACAGAGCA AAGAAAGAGT GTTTGTTCGA AAGATGTAGA 
    ACTTGTTGTA AAAGCAGAGG ATACAACTGT GTCACTCACG TGAAGAGCAC 
    GTGGATTCCT TCTTCTGCAA CTCGTTCTTC ATCTTCTCCT TCTGAGAGGA 
    AGAAGAAGCT CAAAATCGAT AAACAGAGTT CCCCTAATGT CTCGCTACTT 
    CCGACAACCA CTTCTCGTCA AGAGAGAGGC TTCAGAGAGG GGTTACCGGG 
    GAAAATTGAA GCTCCGGCGG TTTTTAAACG GACGAGAGTA ACAGCGATAA 
    GCAACAACGA GCAAGCAGAG ATTGGTTATC AAGCAACAGT AACTATAAGT 
    GGTCATATCT TCAAAGGCTT TCTTCATTAC TATGGTGTTG ATCATAACAA 
    AGCTTTTCCA TGTCTTTCTC AAAAATGATG GAAACTACTT CATAGGATTC 
    TGTGTATAAA GTTTCTCTGT TTTCATCTCA AAGTTTTTGT CTTTTTTTAA 
    CTAAGTGGAT TTTATATATA TTCGACATTA AGGGACAAAA CATTAATGGG 
    C

    Gene models with high sequence identity

    1. AT3G54430.1 [+] show detail - SHI-related sequence 6
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF702 4.6e-46
    HMMTigr Zinc finger, Lateral Root Primordium type 1 1.1e-22
    HMMTigr Lateral Root Primordium type 1, C-terminal 4e-34

    See the detailed result >

    AT3G54430.1

    Model type
    Protein coding
    Short Description
    SHI-related sequence 6
    Curator Summary
    A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
    Computational Description
    SHI-related sequence 6 (SRS6); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT5G12330.4); Has 173 Blast hits to 173 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR