F06919

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F06919

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F06919

Determination of introduced cDNA(s)

  • RAFL08-11-F13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-11-F13 - Resource: pda17580

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-11-F13 - full reading 
    CCGACACAAT CAGACAAAAT AAAAAGGTTC CTTCTTTATA ACTTCCGACG 
    GTGTCCATTA TCTGAATCCG ACAATTCTTG ATGGGTTTTG GCGTTTTGAG 
    TTGATAAACC ATTCTGAGTT GTGAATCAGG GATACAAGAG AGAGAGGAAA 
    GTGGTTTTAC GGTGACCGGA GAGATGAACG GAGAAGGGAT CTCTGATGGT 
    TTGTCGGCTG AGAGGAAAGT GGAAATTAGA GTGAGGAAGA ATGGGAGAAA 
    GGATAAGGTT ATAGTTGAGA AATCTGCTGC TCAAGGTTTA CCTGAAGGAT 
    GGATCAAGAA ACTTGAAATA ACAAATAGAT CAGGCCGTAA AACCAGAAGA 
    GATCCATTCT TCATTGACCC TAAAAGTGAG TATATCTTTC AATCCTTCAA 
    AGACGCATCA CGGTATGTTG AGACTGGCAA TATTGGACAT TATGCACGTA 
    AATTGAAAGA AAGTGATATC GAAGATGATG ATTCCGGAAA TGGAAAGACT 
    GTTCTTCGTC TGGAGTATGT GGACAAGAGA TCTGCAGATG ATGTATTGGA 
    AAAAGAGAAA ACGATAGATG ATGTCAGAAG AAGTAAACGG AGAAACTTAT 
    CTTCTTCTGA TGAACATTCC AAGAATTGTA AAATGACTTC TGACTTGAGC 
    ATTGTAACCT CACAAGTTCT TGAGGATTTG GGGAAGAAGG AAGAGGTGAA 
    AGATCCTATC GAAAAGCAGC TCATAGCGAA ACGGGTTACT AGAAGCCAAA 
    CTAAAGCCAG TACGACTGAG GAAGTCGTCG TAGATTTAAA AAGAAATCTG 
    TCTTCATCAA ATGCAAAATC AGAAAAAGAT TCTGTAAACT CCAGTGTAAG 
    GTCACAAAAA CCAAAGAAGG AAGCTGTTAT GAAGGAAGAA GAGGAACAAG 
    ATTCTTCTGA GAAACGGATC ACAAGGAGTA AAGTTGAAGA GAAGAAGAAT 
    GAGCTAAGTA ATAGTGTAGC CCGACGAACA TCAAAACGGT TAGCTGGTAT 
    TGAGCTTGAA CCAACGCCTG AACTGAAGAC AAGAGCCAAA GTTCAACGAA 
    TAGTACCGCT TGATGATGAA CCGACGCCTG AACTGAAGAC AAGAACCAAA 
    GTTCAACGAG TAGTACCGCC TGATGATGAA CCGACGCCTG AACTGAAGAC 
    AAGAACCAAA ATTCAACGAA TAGTACCTCC TGATGATGAA CCGACGCTTG 
    AACTGAAGAC AAGAACCAAA GTTCAACGAA TATTACCTCC TGATGATGAA 
    CTGACGCCCG AACTGAAGTC AAGAACCAAA GTTCAACGAA TAGTACCTCC 
    TGATGATGAA CTGACGCCTG AATTTAAGAC GAGAACCAAA GTACAACAAA 
    GAATACCTCC TGATGATGGC AGAGCCGGAA AGTGCAAGCA ACCTGTGAAT 
    CATGTTACTA CCAGCGGATC AAAAAAGACG GAAATACCGC TCAACAAGGA 
    AGTAGCCCAA AGCTGTAATG AACAATCCTC TCAAAACCAC ATGCTGCTGC 
    TGCAACAAGC AACAATCGTG TGAGTGCAGA TTCGGCAGTG GGAATACAAA 
    ATATCGGTAA AGCAGTAGGC AGGAAGCCTT CTAAAGACAA GAAGACGCTG 
    AAATCACCAC TGATAGTATA TGAACTGAAT CCAGTTTTTC ATCTTGACGG 
    TTACAAGCAG AAGGAAGAAA TGTCACCTGT GTCACCGTTG TCTTGCCAAA 
    CTTCTGCAAC AAAGTGTGAG AAGACAGCAG CAGGCAAAAG AGTGGGAAGG 
    TCTAGCCCAA AGGCTAACCT TACTACCAGT GTGAAACCAA CTCAGATCTC 
    GCCTCTGAGA TCACCAAATA AAGGAAAGCA ACCACATCCT TCTGACAGTG 
    GTTCTGCCAT TCAAAGGAGA AATAAACTAG CTAATGAGTA TTCTAACTCA 
    TCCGTTGTAA GAGGCACATG CTCAGAAGTG ATGGAGAAGA GTACCAACAG 
    CTTCTCCTCT GCATTTGACT CGACTCTTGC AGATCTTTGT AAAGATCCTT 
    GCATTGCCTT TGCTATCAAA ACTCTAACCG GAGAATCTCT GTGTCTTCTC 
    AACACTCCAG CGATCTCTTC TAATCCCATT AACAACCACA CCAAGCAGAA 
    AGGAGTCTCC TTTACCCCAG AGACTCCAGG AAATGTTAAC ACATGCTCTG 
    AAAAACTGGT ATTTCCGAGT CCACCCCCGG GTGCAAATAT CTGGCAAGAC 
    CCGTGTATCG ACTTTGCTAT AAAAACTCTA ACAGGCGCAA TCCCGATCGG 
    GTTAGATGAA CCAGATACGA AGTCAAAGTC ACAGGGGATG ACGTCTACTA 
    CAGCAGCAAC ACAAGAAGCT AAAGGTAGGC AAAACAACTG TGATTATATG 
    ACGAACAAGA CTGTAGGTAA ACCTGATGAT CTAAGGTTTA CACAATCTTT 
    CTCTAAGGAC TAACAAGAAC AAAATAAAGC CTACTGTACT TTTAGGTGTT 
    TTCGTATATT AGGGTTTTTG ATAATGCCAT TGGTATCGTG TAAGATCCAT 
    GTGCAATGCC TTAGCTTTAT TTTCTTTCGG GCCATGTTCT GTTGTAAATA 
    CATATGTATT AGTGTTGTGT ATCGACAGAA CCTTGAAAAA CTCATAAAAA 
    CTCTTCCTTT AACCACCCCC AAATAAAAAA

    Gene models with high sequence identity

    1. AT5G52230.1 [+] show detail - methyl-CPG-binding domain protein 13
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    superfamily DNA-binding, integrase-type 2.2e-15
    ProfileScan Methyl-CpG DNA binding 11.047

    See the detailed result >

    AT5G52230.1

    Model type
    Protein coding
    Short Description
    methyl-CPG-binding domain protein 13
    Curator Summary
    Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
    Computational Description
    methyl-CPG-binding domain protein 13 (MBD13); FUNCTIONS IN: methyl-CpG binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 6509 Blast hits to 4943 proteins in 596 species: Archae - 10; Bacteria - 822; Metazoa - 2790; Fungi - 554; Plants - 296; Viruses - 34; Other Eukaryotes - 2003 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR