F07449

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07449

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07449

Determination of introduced cDNA(s)

  • RAFL06-16-B16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-B16 - Resource: pda03239

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-16-B16 - full reading 
    ATTCTCTCCA AATTCACCAT TTCCTTCCAC CACTCAGAGA TCTCCCTTTC 
    TTATTAGCTA TGTCTTCTTC TAACACGCCA TCTTCTAGCG CCGCCGCTGC 
    CGGATCGATA GATTCTTCCG CCGCCCGGAG AAATTCCAAG AGACCCAAGT 
    ATTCGAAATT TACTCAGCAG GAGCTTCCTG CTTGCAAACC AATTCTTACG 
    CCTGGTTGGG TGATTTCAAC GTTTTTGATC ATTAGTGTTA TCTTCATTCC 
    CCTTGGTGTT ATTTCTCTCT TTGCTTCTCA GGATGTTGTT GAGATCGTTG 
    ATCGGTATGA TAGTGCATGC ATACCTCTAT CTGATAGGGC TAACAAGGTT 
    GCATACATTC AAGGAACTGG AAATAAATCT TGTACCCGGA CGCTAATTGT 
    GCCTAAGCGT ATGAAGCAGC CTATCTACGT ATATTACCAG CTTGAGAACT 
    TCTACCAGAA TCACCGCAGG TATGTGAAAA GCCGAAGTGA TTCGCAATTG 
    AGAAGTGTGA AAGATGAGAA TCAAATAGAC GCATGCAAGC CTGAGGATGA 
    TTTTGGTGGG CAGCCAATTG TGCCATGTGG TCTAATTGCT TGGAGTCTCT 
    TTAATGACAC ATACGTTCTA TCAAGAAATA ACCAGGGTTT AACGGTAAAC 
    AAGAAAGGAA TTGCATGGAA GAGCGACAAG GAACACAAGT TTGGGAAAAA 
    TGTGTTTCCC AAGAACTTTC AGAAGGGCAA TCTCACTGGT GGTGCCAGTC 
    TAGATCCAAA TAAACCATTG AGTGATCAAG AGGATCTGAT CGTGTGGATG 
    AGGACTGCTG CGTTGCCAAC ATTTAGAAAA TTATACGGGA AGATAGAGAG 
    TGACTTGGAG AAGGGTGAGA ACATACAAGT GACTCTGCAG AACAACTACA 
    ACACATACAG TTTCAGTGGG AAGAAGAAGC TTGTTCTGTC AACAACAAGT 
    TGGCTTGGTG GAAAGAACGA CTTCCTCGGC ATTGCTTACC TCACCGTTGG 
    GGGAATCTGT TTCGTCTTGG CACTTGCATT TACCGTCATG TATCTTGTGA 
    AACCCAGGCG ACTCGGTGAT CCTACCTACT TGTCGTGGAA CAGAATTCCT 
    GGAGGTCGTT AAACAGATGA CTGCATCATC TGCGTATATA AATCTACTTA 
    TCTCTGGTTG TAATTTGATC CAAAATTGAA AGTGATGATC TTTTTTTTTT 
    TAATATAGAT GTGAAATGTA TGTATGATGT TACAGTTGGA ATATGCTCAT 
    TACATAGAAT GATTGATGCT TCCTATCATG CCC

    Gene models with high sequence identity

    1. AT3G12740.1 [+] show detail - ALA-interacting subunit 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Protein of unknown function DUF284, transmembrane eukaryotic 3.9e-159
    HMMPfam Protein of unknown function DUF284, transmembrane eukaryotic 2.7e-93
    HMMPIR Protein of unknown function DUF284, transmembrane eukaryotic 1.9e-222

    See the detailed result >

    AT3G12740.1

    Model type
    Protein coding
    Short Description
    ALA-interacting subunit 1
    Curator Summary
    Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3.
    Computational Description
    ALA-interacting subunit 1 (ALIS1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (TAIR:AT1G54320.1); Has 864 Blast hits to 864 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 234; Plants - 160; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR