F07450

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07450

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F07450

Determination of introduced cDNA(s)

  • RAFL09-22-J11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-J11 - Resource: pda05643

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-J11 - full reading 
    GATTGATTCC AATCTTCTTT CATTTTCTTC TTCTTCTTCT TCTGGGGAAG 
    GGGCAGGTTA AAATTATGCC ATCTATTCAA ATCGTGCCTA TCCTCAGATC 
    TTAACTCTTT TCTCTACGAG ATTCGGCATC TGGGTTTTAT TCTTCTTGAG 
    CAAAATGCAA TCGGATAATG GAAAGCTTTT CATCGGTGGG ATATCTTGGG 
    ACACCAATGA GGAACGTCTC AAGGAGTATT TCAGCAGTTT TGGAGAAGTG 
    ATCGAAGCTG TCATCTTGAA AGATCGTACC ACTGGTCGTG CTCGTGGTTT 
    CGGTTTTGTT GTTTTTGCTG ATCCTGCTGT TGCTGAGATT GTTATCACCG 
    AAAAACATAA TATTGATGGC AGATTGGTTG AAGCCAAGAA AGCTGTTCCC 
    AGAGATGACC AAAACATGGT AAATAGAAGC AACAGCAGTA GCATCCAAGG 
    TTCTCCCGGT GGTCCAGGTC GCACAAGGAA GATATTTGTT GGAGGATTAC 
    CTTCTTCGGT TACAGAGAGT GATTTCAAGA CGTATTTTGA GCAGTTTGGT 
    ACAACTACGG ATGTGGTTGT CATGTATGAT CACAACACAC AAAGGCCTAG 
    AGGTTTCGGG TTTATAACCT ACGATTCCGA GGAGGCGGTT GAAAAGGTAT 
    TGCTCAAGAC ATTCCATGAA CTAAATGGTA AAATGGTTGA GGTTAAGCGA 
    GCTGTTCCAA AGGAGTTATC TCCAGGTCCA AGTCGCAGTC CTCTTGGTGC 
    AGGTTACAGC TATGGAGTTA ATAGGGTCAA TAACCTCCTT AATGGGTATG 
    CTCAAGGGTT TAATCCCGCT GCAGTTGGAG GCTACGGACT TAGGATGGAT 
    GGTCGGTTCA GTCCGGTTGG TGCTGGAAGA AGCGGGTTTG CAAATTACAG 
    TTCTGGATAC GGGATGAATG TGAACTTTGA TCAGGGATTG CCCACAGGGT 
    TCACGGGAGG TACAAATTAC AATGGAAATG TTGACTATGG CCGAGGAATG 
    AGCCCGTACT ACATTGGTAA CACAAACAGG TTTGGTCCTG CGGTTGGCTA 
    TGAAGGGGGC AACGGAGGAG GAAACTCATC CTTCTTCAGT TCGGTTACAC 
    GGAACTTATG GGGAAACAAT GGTGGTCTTA ACTATAACAA CAATAATACA 
    AACTCAAACT CCAATACATA TATGGGAGGA TCATCAAGTG GGAACAACAC 
    ACTTAGTGGT CCATTTGGAA ATTCAGGAGT CAATTGGGGT GCTCCTGGAG 
    GAGGAAACAA TGCTGTGAGT AACGAGAATG TGAAGTTTGG TTATGGAGGA 
    AACGGTGAAT CTGGTTTTGG GTTGGGAACA GGTGGTTATG CAGCAAGAAA 
    CCCAGGGGCT AACAAGGCAG CACCATCCTC TTCATTCTCT TCTGCCTCAG 
    CAACCAACAA CACGGGTTAT GATACAGCAG GACTTGCAGA GTTTTACGGG 
    AATGGTGCAG TTTATAGTGA CCCTACATGG AGATCACCAA CTCCTGAGAC 
    AGAAGGGCCT GCTCCTTTTA GCTATGGGAT TGGAGGAGGG GTTCCTTCTT 
    CAGATGTTTC AGCTAGAAGT TCATCTCCAG GTTATGTTGG CAGTTACAGT 
    GTGAACAAGA GACAACCAAA CAGAGGAATT GCTACTTAGT ACAATCGTTT 
    TTGTTTTACC ACGATATTGT AGGCGAGCCA TCACGGTGAA CGATCTGTGT 
    CTTTTGGCGA ATCTTTTAGA TTATCTTCTT TTCCCTTCAT ACAAAGCCAG 
    TGAGGACGAA ACTTGATCAT ATCATCACCT AGAGCTAACC AGAGAATCCC 
    GCAGACTTTT CTGTCATGGT TTGGTTTTCT AAATTCATTG TTCCTCCTAG 
    GCTTTTTTCT GCTTTCTTTT TTTTTCTATT TTTGTTTTCT TTTCTTCTTT 
    CAATGAGGGA CAGAAGAAAC TGTATCAGTC TCCGGCGAGG CGGTAATACA 
    TAAGGAGAGT TCAAAACAAA AACAC

    Gene models with high sequence identity

    1. AT3G07810.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RNA-binding domain, RBD 5.8e-24
    superfamily RNA-binding domain, RBD 1.5e-22
    HMMPanther RNA-BINDING PROTEIN-RELATED 9.3e-161
    HMMPanther RNA-BINDING PROTEIN 9.3e-161
    ProfileScan RNA recognition motif, RNP-1 16.944
    ProfileScan RNA recognition motif, RNP-1 17.779
    Coil coiled-coil 0
    Gene3D Nucleotide-binding, alpha-beta plait 6.7e-23
    Gene3D Nucleotide-binding, alpha-beta plait 7.2e-22
    HMMSmart RNA recognition motif, RNP-1 4.5e-22
    HMMSmart RNA recognition motif, RNP-1 9e-25
    HMMPfam RNA recognition motif, RNP-1 3.7e-16
    HMMPfam RNA recognition motif, RNP-1 2.2e-18

    See the detailed result >

    AT3G07810.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G47620.2); Has 54138 Blast hits to 30457 proteins in 1475 species: Archae - 38; Bacteria - 13880; Metazoa - 18730; Fungi - 4978; Plants - 7803; Viruses - 149; Other Eukaryotes - 8560 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR