F07824

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F07824

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F07824

Determination of introduced cDNA(s)

  • RAFL09-35-K16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-35-K16 - Resource: pda06112

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-35-K16 - full reading 
    ATCACTTTCT CATCTCTTTT CCGCATTTCG AAGCCATGGC TAAACAACTG 
    CTTCTTCTTC TCCTTCTCTT CATCGTCCAC GGCGTTGAAT CAGCTCCTCC 
    GCCGCACTCC TGTGACCCTT CAAATCCAAC CACGAAACTC TACCAGTTCT 
    GCCGCACTGA CCTCCCAATT GGCAAGCGAG CGCGTGATCT CGTCTCGAGG 
    CTAACCATAG ACGAGAAGAT CTCGCAGCTG GTGAATACAG CTCCAGGGAT 
    ACCGCGTCTT GGAGTTCCGG CGTACGAATG GTGGTCAGAA GCTTTACACG 
    GCGTAGCCTA CGCCGGTCCA GGAATCCGGT TTAACGGAAC GGTTAAAGCT 
    GCTACCAGCT TTCCTCAAGT CATCTTGACC GCTGCTTCAT TCGACTCCTA 
    TGAATGGTTC CGCATTGCTC AAGTTATAGG AAAGGAAGCA AGAGGAGTGT 
    ACAACGCAGG GCAAGCGAAT GGAATGACAT TTTGGGCACC AAACATTAAC 
    ATATTTAGAG ATCCACGGTG GGGAAGAGGC CAAGAAACTC CCGGCGAGGA 
    TCCGATGATG ACCGGAACTT ACGCGGTGGC TTACGTTAGA GGACTACAAG 
    GTGACTCTTT TGACGGTCGG AAAACACTCT CCAATCATCT CCAAGCCTCC 
    GCTTGTTGTA AGCATTTTAC AGCGTACGAT CTTGATCGTT GGAAGGGTAT 
    TACTCGCTAC GTCTTCAATG CTCAGGTGAG TTTGGCTGAC TTGGCGGAGA 
    CGTACCAACC ACCGTTCAAG AAATGCATAG AAGAAGGTCG AGCCAGTGGC 
    ATCATGTGTG CTTATAACCG AGTCAACGGC ATTCCTTCTT GCGCTGACCC 
    GAATCTTTTG ACTCGAACCG CTCGTGGTCA ATGGGCTTTC CGCGGATACA 
    TTACTTCAGA TTGTGACGCA GTCTCAATCA TCTACGATGC TCAAGGCTAC 
    GCTAAAAGCC CTGAAGACGC TGTTGCTGAT GTCCTCAAAG CTGGCATGGA 
    CGTAAACTGT GGATCATACT TACAAAAACA CACCAAATCA GCTCTTCAAC 
    AGAAGAAAGT GTCTGAAACA GACATTGACA GAGCTCTACT CAATCTTTTC 
    TCTGTTAGGA TTCGTCTCGG TCTCTTTAAC GGCGATCCAA CCAAATTACC 
    TTACGGAAAC ATTAGTCCTA ACGAAGTTTG TTCACCGGCT CATCAAGCTT 
    TAGCACTTGA TGCTGCTCGT AATGGTATAG TTCTCTTGAA AAACAATCTT 
    AAACTCCTTC CTTTCTCCAA ACGCAGCGTT TCGTCTTTAG CTGTGATCGG 
    TCCAAACGCT CACGTCGTTA AAACGCTTCT TGGAAACTAC GCTGGTCCGC 
    CTTGTAAGAC TGTGACTCCT CTTGATGCCT TACGTAGTTA TGTCAAAAAC 
    GCTGTTTACC ACCAAGGATG TGATTCCGTG GCTTGCTCTA ACGCTGCGAT 
    TGATCAAGCG GTTGCAATTG CAAAAAATGC TGATCATGTG GTTTTGATTA 
    TGGGACTAGA CCAGACTCAA GAGAAAGAAG ATTTTGACCG TGTGGACCTT 
    AGTCTTCCCG GGAAGCAACA AGAACTCATA ACAAGCGTTG CAAATGCTGC 
    AAAGAAACCG GTGGTCCTTG TTCTGATATG TGGCGGTCCT GTCGATATTT 
    CATTTGCTGC GAATAACAAT AAGATAGGAA GCATTATATG GGCTGGTTAT 
    CCTGGAGAAG CTGGAGGGAT TGCTATTTCT GAAATCATAT TCGGAGATCA 
    CAATCCCGGA GGGAGATTAC CAGTGACATG GTATCCTCAG AGCTTTGTGA 
    ATATACAGAT GACAGACATG AGAATGCGGT CTGCAACTGG ATATCCTGGA 
    AGGACTTACA AATTCTATAA AGGACCTAAA GTGTATGAGT TTGGTCATGG 
    TCTTAGCTAC TCAGCTTACT CTTACCGGTT CAAGACTCTG GCTGAAACCA 
    ATCTCTACTT GAACCAATCT AAAGCTCAAA CCAACTCGGA CTCTGTTCGA 
    TACACTCTGG TTTCGGAAAT GGGGAAAGAA GGTTGCGATG TAGCCAAGAC 
    TAAGGTCACT GTAGAGGTGG AAAATCAAGG GGAGATGGCA GGGAAACATC 
    CGGTGCTGAT GTTTGCGAGG CACGAGCGAG GAGGAGAAGA CGGTAAACGA 
    GCAGAGAAAC AGCTTGTTGG GTTTAAGAGC ATTGTGTTAA GCAATGGAGA 
    GAAAGCAGAG ATGGAGTTTG AGATTGGTCT TTGTGAGCAT TTGAGCAGAG 
    CTAATGAATT TGGAGTAATG GTTCTTGAAG AAGGAAAGTA TTTCTTAACC 
    GTTGGAGATT CAGAGCTCCC TCTTATTGTT AATGTCTGAA TCTGAAAAAC 
    ATAAACAAGA AAAAAGACAT TCTCCTTTTG AATTGGCTTT TTCATATATA 
    TTTGAAATAA CATGAAATGA ATGTGAAG

    Gene models with high sequence identity

    1. AT1G78060.1 [+] show detail - Glycosyl hydrolase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 3, C-terminal 1.7e-53
    HMMPfam Glycoside hydrolase, family 3, N-terminal 1.8e-50
    superfamily Glycoside hydrolase, catalytic core 1.7e-99
    superfamily Glycoside hydrolase, family 3, C-terminal 1.2e-29
    Gene3D Glycoside hydrolase, family 3, N-terminal 6.5e-86
    Gene3D no description 1.2e-51

    See the detailed result >

    AT1G78060.1

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase family protein
    Computational Description
    Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G10560.1); Has 9183 Blast hits to 7917 proteins in 1177 species: Archae - 63; Bacteria - 5533; Metazoa - 16; Fungi - 1604; Plants - 525; Viruses - 0; Other Eukaryotes - 1442 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR