F08541

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08541

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08541

Determination of introduced cDNA(s)

  • RAFL06-89-I20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-89-I20 - Resource: pda07789

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-89-I20 - full reading 
    AAAATATCAT AAACATATAA ACATAAACGC CAATCGCAGC TTTTGTACTT 
    TTGGCGGTTT ACAATGGAGA AAGGTTTGAC GATGTCTTGT GTTTTGGTGG 
    TGGTTGCATT CTTAGCCATG GTTCATGTCT CTGTTTCAGT TCCGTTCGTA 
    GTGTTTCCTG AAATCGGAAC ACAATGTTCT GATGCTCCAA ATGCTAACTT 
    CACACAGCTT CTCAGTAACC TCTCTAGCTC ACCTGGCTTT TGCATAGAAA 
    TTGGCGAGGG AAATCCAATA GGCGCTTCAT GGTTAATACC ACTTACACAA 
    CAAGCGGAAG TAGCGTGTGA TAAGGTGACG CAGATGGAAG AGTTGAGTCA 
    AGGATACAAC ATTGTTGGAA GAGCTCAGGG GAGCTTAGTG GCTCGAGGCT 
    TAATCGAGTT CTGCGAAGGT GGGCCTCCTG TTCACAACTA TATATCCTTG 
    GCTGGTCCTC ATGCTGGCAC CGCCGATCTT CTTCGGTGTA ATACTTCTGG 
    CTTAATTTGT GACATAGCAA ATGGGATAGG CAAGGAAAAT CCCTACAGCG 
    ACTTTGTTCA AGATAATCTT GCTCCTAGTG GTTATTTCAA AAACCCTAAA 
    AATGTGACAG GGTACCTGAA AGACTGTCAG TATCTACCTA AGCTTAACAA 
    TGAGAGACCA TACGAAAGAA ACACAACTTA CAAAGACCGT TTCGCAAGTT 
    TACAGAACCT GGTTTTTGTC CTGTTTGAGA ACGATACGGT TATTGTTCCA 
    AAAGAGTCAT CTTGGTTCGG GTTTTATCCG GATGGTGACT TAACACATGT 
    TCTCCCTGTT CAAGAGACAA AGCTCTATAT AGAAGATTGG ATAGGTCTGA 
    AAGCATTGGT TGTTGCTGGA AAAGTGCAGT TTGTGAATGT AACCGGTGAC 
    CACTTAATAA TGGCGGACGA AGATCTCGTC AAATACGTCG TACCTCTTCT 
    CCAGGATCAA CAGTCTGCCC CACCAAGACT CAACCGCAAG ACCAAGGAGC 
    CCTTGCATCC TTAAAATGAG CAAATAGTTC AATCGCTATA CTAATTCATC 
    CAATGTCGAA TAAGCTCAGT GATGATTGTG TGACACAATA ATCCTTCTTC 
    TTATATGAAT AATAAAAGCA TACTATCT

    Gene models with high sequence identity

    1. AT5G47350.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Palmitoyl protein thioesterase 1.8e-05
    FPrintScan Palmitoyl protein thioesterase 1.8e-05
    FPrintScan Palmitoyl protein thioesterase 1.8e-05
    Gene3D no description 2.5e-83
    HMMPanther PALMITOYL-PROTEIN THIOESTERASE 1 6.7e-181
    HMMPanther PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOS 6.7e-181
    superfamily alpha/beta-Hydrolases 1.6e-72
    HMMPfam Palmitoyl protein thioesterase 6.4e-40

    See the detailed result >

    AT5G47350.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G47330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR