F09124

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09124

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09124

Determination of introduced cDNA(s)

  • RAFL15-26-P22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-26-P22 - Resource: pdz88524

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL15-26-P22 - 5 prime EST 
    AACCGACGAT CTGGTGCTGG ATAAGCCTTT TGCTTCATTC TCACTTCCTT 
    CCTCATCCAA AAAAGCTCCT CCATTTCAAT GGCGACAGCA TCAGCTCTCT 
    CATCACTCTC TTCACTCTCA CTCCACACCC GAACCTCTTC TCTCATCTCC 
    TCTTCCTCCA CAAAATCCAT CGTCTCTTTC TCCTCCTTCC TCAACCGCCG 
    CTTCTCATCT CTCACTCTCG TCAAAGCCTC ATCGACCGAT ACCGAAACCA 
    TCTTCTTCGA AGACGAAACA CCAGAAATAA CCGCAAATGT CGTCTTCGAC 
    CCACCAATTG CTCCCGAAGG ATTCGTCTCT CCTCCGTATT TCGACGAAGG 
    AAGCGACGAG ACAGAGGAAG AGATCGCTAC CGCTTTTGAA GAGCTCTATG 
    GACCTGCGTA TAGTGGTGAG AGTATGCTTG GGAAAGATAT TTATGTGATG 
    GACTCAAAGC ATAAGAAGAG TTCAGGTATT GGTGGGAAGC CAAAGAAAGA 
    TAAGATTAGA GATGGGTTTG AAGAGAGAGT TGTGCAAGTT AGGAGAGTGA 
    CTAAGGGTGT TAAAGGAGGG AAGCAATTGA AGTTTANAGC TATCGGNGGT 
    GGTGGNGATA AACAAGGGA

    Gene models with high sequence identity

    1. AT2G33800.1 [+] show detail - Ribosomal protein S5 family protein
      E-value: 0; Score: 98.86

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL15-26-P22 - 3 prime EST 
    AGTAAATACA TTACTCTCAA ATTATAAAAA ATAACTTTTG TATGAAATAG 
    CTTAATATAT AAGGTTACAA CTAACAATTA CATAAGAAGA AGAAAGATAG 
    AGCATCACAT CAAATTATAC ATGTGATTTT TACAAACTAA GCAAAATATA 
    AATTTCGACA TCAAACAAAC TTAATATATA TATTTGATAT TTGTTAATTC 
    AAATCAGATC AGTGCAAGGA ATCAGAAGGC AAGAAACTAA ACATGACCAT 
    ATCTCTAACA TTTCCTTTAA GATACATAAA TTTCCTCATC AAACCTTCTT 
    TCACAAACCC AACTTTTTCA AGAACCTTTT GAGATCCAAC ATTGTCAACG 
    TCAAAAAGTG CCTCAAGCCT CTGCATCTCT GGCTTCTCCT GAATATCTCC 
    CCCGGCAAAA GCCTCACCGG TTCAGTGGGG ATCCCTTTCC CC

    Gene models with high sequence identity

    1. AT2G32030.1 [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
      E-value: 0; Score: 97.97

    AT2G32030.1

    Model type
    Protein coding
    Short Description
    Acyl-CoA N-acyltransferases (NAT) superfamily protein
    Computational Description
    Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT2G32020.1); Has 9856 Blast hits to 9837 proteins in 1766 species: Archae - 84; Bacteria - 9082; Metazoa - 1; Fungi - 109; Plants - 131; Viruses - 3; Other Eukaryotes - 446 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT2G33800.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S5 family protein
    Computational Description
    Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to cadmium ion, response to cold, translation; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5, bacterial-type (InterPro:IPR005712), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G64880.1); Has 8967 Blast hits to 8967 proteins in 2880 species: Archae - 262; Bacteria - 5121; Metazoa - 552; Fungi - 265; Plants - 165; Viruses - 0; Other Eukaryotes - 2602 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR