F09244

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09244

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09244

Determination of introduced cDNA(s)

  • RAFL06-16-L06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-L06 - Resource: pda07587

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-16-L06 - full reading 
    AGCGATTCAA AATTTCACAA ATTAAAGTCT TCTTCCTCTC CGAATCAGAG 
    ATTGTCTCCT TCTTAGCTCA GATCTGGGAG CTTCTTGTGA TAGATTTGGA 
    AGAAGATGAC TGTGATCGAT ATTCTGACTA GAGTTGACTC GATCTGTAAG 
    AAGTACGACA AGTACGATGT CGACAAACAG CGGGAGGCCA ATATCTCCGG 
    CGATGATGCC TTTGCTCGTC TCTATGGAGC TTTCGAAACC CAAATCGAGA 
    CCGCTCTCGA GAAAGCTGAA CTTGTTACGA AGGAGAAAAA CAGGGCTGCT 
    GCTGTTGCAA TGAATGCTGA GATCCGCCGG ACCAAGGCAC GATTGTCAGA 
    GGAAGTTCCC AAGTTGCAAA GACTTGCTGT CAAGCGGGTT AAGGGCCTTA 
    CAACCGAAGA GCTTGCTGCG AGAAATGATT TGGTGCTCGC TCTTCCAGCC 
    AGGATTGAAG CCATACCTGA TGGGACAGCA GGTGGCCCTA AAAGCACTAG 
    TGCTTGGACT CCCTCCTCAA CAACATCTCG TCCTGATATC AAATTTGATT 
    CAGATGGGCG TTTTGACGAT GATTACTTTC AAGAATCAAA TGAATCTAGC 
    CAATTCAGGC AGGAGTATGA GATGCGGAAA ATAAAACAGG AACAAGGTCT 
    TGACATGATC TCCGAAGGGT TAGATGCTTT GAAGAACATG GCTTCTGATA 
    TGAACGAGGA ACTGGATAGA CAAGTTCCAC TGATGGATGA AATCGACACA 
    AAGGTGGACA GAGCAACCTC CGATCTTAAG AACACCAATG TTAGACTTAA 
    AGATACCGTG AACCAGCTGA GATCTAGCCG GAACTTCTGT ATCGATATTG 
    TTTTGTTGTG TATTGTTCTG GGTATCGCTG CATACTTATA CAATGTACTG 
    AAGTAATGAG ATGAACCCTA CGAAAGGACC CATTAGTACT TATCACCCGA 
    GTCAATATCC AGTGTGTGCT TGTGTCTTAC TCTTCTTCTC TGATATTTCT 
    ACGAGAGTTT CTTCTTAATG TCAAGAATAT TCAAGTCTTA TCTTCCTGCA 
    TCGACTTTTC TCCATGTTGT TCGTGTGCAT AGATTCATCT GTCAAAATGT 
    GCGTCAAACT AATTGATTGC TGTGTCTGCG GCAGTGTGCT ATT

    Gene models with high sequence identity

    1. AT3G09740.1 [+] show detail - syntaxin of plants 71
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Syntaxin/epimorphin, conserved site 0
    HMMPfam Target SNARE coiled-coil domain 2.5e-15
    HMMPanther SYNTAXIN 6 3.5e-14
    HMMPanther SYNTAXIN 3.5e-14
    ProfileScan Target SNARE coiled-coil domain 13.812
    Coil coiled-coil 0
    HMMSmart Target SNARE coiled-coil domain 4e-06
    Gene3D no description 1.3e-07

    See the detailed result >

    AT3G09740.1

    Model type
    Protein coding
    Short Description
    syntaxin of plants 71
    Curator Summary
    syntaxin of plants 71 (SYP71)
    Computational Description
    syntaxin of plants 71 (SYP71); FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, protein targeting to membrane; LOCATED IN: integral to membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 72 (TAIR:AT3G45280.1); Has 541 Blast hits to 539 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 116; Plants - 188; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR