F09437

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09437

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09437

Determination of introduced cDNA(s)

  • RAFL04-19-P16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-19-P16 - Resource: pda07206

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-19-P16 - full reading 
    AAAGGTCTTT GAGAATCCAA AAACGTCTTA TGGTTTAGCT CTCAAATTTC 
    TCCTTCGATT CCATCTTCCT CCGGCTTCAA GTCGCCGGAT CTTCTTGATT 
    TCCGATTCAC TTGGCTTTCC TCTTCTCTTC CTTTTAACAC ACGACGACGC 
    TTCATAGTTT TTTGTTGTGA TTCAGGAAGA GGTATGTAAT TCAGGATTTT 
    CCGGTGATTT TGGTGGGAAC GTTTGGAGAA ATTTCGAGCT TAGTAGTATT 
    CGTAGGAAAG TTTTCTTCTT TTATGATTTG TAGTTTTTGT GGATTAATGG 
    TTGAAGGTGA GAAATGGGGC TTCGATGGAT TTGAAAAGAT TTTGTATCTT 
    CGTGGAAATG AGATCGTTGG AGATTGCAGC AAGTCATCTC ATTCGTATTC 
    ACGGGTTTGC TTAGGTACTT TGGAGATATT GAGAGTTTTG GTTGTTTAGT 
    CTTTGATAAA AAGGTTGTTT AGTTTGTTTT CGAGCTTAGA GATGGATGAA 
    GAGGCTACTT CGTGGATTAG GAGGGCTAAG TTTTCTCAAA CGGTTTCTTA 
    TCGTTTGAAT TCTTCAAAGT TAGCTTCTCT TCCTTTTATG ATAAACCAAG 
    ATAAGTTTTC TGGATTAAAA GCTATACCTC AGAGATCATC TTCTTCGTCG 
    TCGGCATCAT CATCGGATCC TAAGTTGGTT TCGAGTAACT CACAGACTAC 
    GGGAGATACT TCGAGTTTGG AAGCTGCTGA TGTATATGTT GTTGATTCGG 
    AAATACAGAC AAACCCGGTT ACTCATAAGC AGAGATCTGT TTCTCCTTCG 
    CCTCAGATGG CTGTTCCCGA TGTGTTTAAG GAAGCGAGGT CTGAGCGTAA 
    GAGATTTTCT ACTCCACATC CAAGAAGAGT GGAATCGGAA AAGGGAATGA 
    AGCCTAAGTT ATCTCATAAA AACTCCTTTG ACAAGAGATC ATTTAACTTG 
    CGGTCTCCTT CAGGTCCTAT CAGAGATCTT GGCACTTTGA GAATTCAAGA 
    GAGGGTCAAG AGCAAGAAGG ACACTGGATG GTCTAAGCTT TTTGATAATA 
    CTGGTCGTAG AGTGAGTGCT GTGGAAGCTT CTGAAGAGTT CCGTGTTGAT 
    ATGTCAAAGC TGTTCTTTGG GCTTAAGTTT GCTCATGGTT TATACAGCCG 
    GCTATATCAT GGTAAGTATG AAGATAAAGC TGTTGCCGTG AAGCTTATCA 
    CTGTACCTGA TGATGACGAT AATGGATGCT TGGGAGCTCG TTTAGAGAAA 
    CAGTTTACCA AGGAAGTGAC CCTTTTGTCT CGATTGACCC ATCCAAATGT 
    TATAAAGTTT GTTGGAGCGT ACAAAGATCC GCCTGTATAT TGTGTCCTCA 
    CGCAGTATTT ACCTGAAGGA TCTTTAAGAT CTTTTCTGCA CAAGCCTGAG 
    AATAGGTCTC TTCCTTTGAA AAAGCTTATA GAGTTTGCTA TAGATATTGC 
    TAGAGGGATG GAATATATTC ACTCACGACG CATAATTCAT CGGGATCTTA 
    AGCCAGAAAA TGTATTGATC GACGAAGAAT TCCATTTGAA GATCGCTGAC 
    TTTGGCATAG CGTGCGAGGA GGAGTACTGT GACATGTTGG CTGATGACCC 
    CGGAACATAT AGGTGGATGG CACCTGAAAT GATAAAACGG AAACCACATG 
    GACGTAAGGC CGATGTATAC AGCTTTGGAC TCGTTTTATG GGAAATGGTA 
    GCTGGAGCAA TCCCATATGA GGACATGAAT CCTATTCAAG CTGCTTTCGC 
    AGTCGTACAT AAGAACATTA GGCCAGCTAT CCCGGGAGAT TGTCCAGTAG 
    CCATGAAAGC TCTGATAGAG CAGTGTTGGT CGGTTGCACC AGATAAGAGA 
    CCCGAGTTCT GGCAGATAGT GAAAGTGCTT GAACAGTTTG CGATATCACT 
    GGAACGTGAA GGGAACCTGA ATCTGTCTTC GAGCAAGATC TGTAAGGACC 
    CAAGGAAAGG TCTGAAACAC TGGATCCAGA AGCTTGGACC AGTCCACGCA 
    GGAGGAGGCG GTGGCAGCAG CAGCAGCGGC CTTGGTGGCT CAGCCTTGCC 
    GAAGCCTAAA TTCGCTTGAG AGACAGGAAA GAGTCTCTTT TGTAAATTTA 
    TATATAATAC AAAAAGAAGG GTTTTGTGTT TGTGTTGTAT CCTTTTTTTT 
    GTGGATTGTT GTTGTTAGTG ATCTTTCATC GTCAATGTCA TCTTCTCTGG 
    ATTTGATGTG TAATGACTGC CAACTGGGGA ATGGTTGTGA TTTGATATTT 
    ATGGGATTCA AATATCGTTT CT

    Gene models with high sequence identity

    1. AT5G58950.1 [+] show detail - Protein kinase superfamily protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 6.6e-56
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.4e-68
    HMMPfam Serine-threonine/tyrosine-protein kinase 4.5e-61
    ProfileScan Protein kinase, catalytic domain 42.011
    superfamily Protein kinase-like domain 1.5e-76
    Gene3D no description 1.8e-10
    Gene3D no description 5.2e-58
    HMMPanther PROTEIN-TYROSINE KINASE 1.8e-231
    HMMPanther SERINE-THREONINE PROTEIN KINASE 1.8e-231
    FPrintScan TYRKINASE 1.4e-18
    FPrintScan TYRKINASE 1.4e-18
    FPrintScan TYRKINASE 1.4e-18
    FPrintScan TYRKINASE 1.4e-18
    FPrintScan TYRKINASE 1.4e-18

    See the detailed result >

    AT5G58950.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G46930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR