F09740

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09740

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09740

Determination of introduced cDNA(s)

  • RAFL08-12-D11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-12-D11 - Resource: pdz87782

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL08-12-D11 - 5 prime EST 
    GAAGTGAGAA ACGCAACAAC ACCACCNGAA AGAGAGAGTC CAAATTCGAA 
    AGAGAAAAAG AATCAAATTC CTTCTTCTTC CTTTTTTGAT TTTCAATTAT 
    TACTTTAATC TTCTTTCCCG CTCTCTATTC TTCTTCTTCT TTAGGATCAA 
    TCACCGTTTA GCTTTCTTCC CATACGTCTC TCCGTTTACG ACCAGTATAC 
    AGAGGCTGGA GCTGGGGAAG AAAAGGATTG TCTATGGAGG GAGACGTCGG 
    AATAGGTTTG GTATGCCAGA ATACTATGGA TGGGAAGGCG AGTAATGGAA 
    ATGGTTTAGA GAAGACTGTA CCTTCTTGTT GCCTTAAGGC TATGGCATGT 
    GTACCTGAGG ATGATGCTAA GTGTCACTCC ACTGTTGTTT CTGGGTGGTT 
    TTCGGAACCT CACCCTCGCT CTGGGAAAAA AGGCGGCAAA GCAGTCTATT 
    TCAACAACCC TATGTGGCCA GGAGAAGCAC ACTCACTGAA AGTTGAGAAA 
    GTTCTGTTCA AAGACAAGTC GGATTTTCAG GAAGTCCTAG TGTTCGAGTC 
    AGCCACGTAC CGGAAAGGGG CTTGTTCTAN ATGGTATCGT ACAGCTGACC 
    GAAAAAG

    Gene models with high sequence identity

    1. AT5G53120.6 [+] show detail - spermidine synthase 3
      E-value: 0; Score: 99.34

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL08-12-D11 - 3 prime EST 
    CGTTTTTTTT TTTGAGTCCC AAGGAATAGG AGCATTTATT CATAATTTAA 
    GACAGAAAAG TTTATTGAGC ATCCGTAATT TGGATGCTTC CATACAAATA 
    ATGAGCAAGT TCTAGATGGC ATAGATGTAT ATATTACATC GAATTTACTT 
    GAGAATTTGG CTACCATAAT CATCATTGAA CTTGTCGTAA AGATGGGCGT 
    GCAGATGAGC CGATGGTCGA GTGTTGCTCA GAGCTCGATC AATGTCTTCT 
    GGCAGGATGG GACCAATTTT TGGCAGCTCG TCTTCAGGCA CAACATCTTC 
    TCTGTCTTCC AAAATAGCCA ATGTGCGTCT CAGTGGTTGC ATCGCAGCTT 
    CCTTACAAAG TATTCGAATG TCTGAACCAG AGTAGCCCTC AGATTTCTCA 
    ACCAACACAT CATGAGGCAA TGGCTCATCA CCTGGTTGTG AGG

    Gene models with high sequence identity

    1. AT2G34560.2 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 0; Score: 99.53

    AT2G34560.2

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT5G53120.6

    Model type
    Protein coding
    Short Description
    spermidine synthase 3
    Curator Summary
    encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.
    Computational Description
    spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1).
    Link
    InterPro Scan - TAIR