F10542

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Seed::deep brown

Original: F10542

Determination of introduced cDNA(s)

RAFL04-16-F02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-F02 - Resource: pda00552

full reading [+] show sequence

GTGTGATTTT CTAAGACTTG AGTAATCTTG TTTTCCGAAA TTTTCTCACC 
AAGCTCGAAC ACAAAGATCG GCCATGGCTA CGCTCTTCAC CGTCGCTCGT 
CCTTCTTCAC TCCTCTATGT TTCCTCCATA AATCCAAGCA AGACCTTCTC 
TCCTTCTATC TCCCTAAAAC TTAACTCTCT CTCTTTCTCT TTTGGTTATC 
GTCCCAAGCC ACTCCGGTTT TCTAAAATCC GATCTTCTCT GCCCTCGGAA 
TCTGAATCGG AATCCGACCT AGATGCGTCT GCAGTTACAG ATGAATGGGG 
TGAGAAACCT GGAGATGCAA ATGAGCCCGA CTCTCAGCCA GATAATGTGA 
CCGTGAATGT GATTACGGAC GAATGGGGCG AGAAATCCGG ACCCGAACTT 
GAGGAATCCG GGACCCGGTT TATGGAATCG GATCCTCCAA GGAACGAAGA 
CGAGTGGGGA GGAGAAATTG GAGGAGAAAC TGAAGCCGAC GCTGGAAATG 
GAAGTGCGGT GTCTGACCCG ACTTGGGAGC TGAAAAGGTG TTTGGCGGAT 
TCGGTGTACG GAACTGAATT AGGTTTCAAA GCTGGGTCAG AAGTCCGAGC 
GGAGGTTTTG GAGCTTGTGA ATCAACTGGA AGCTCTGAAT CCTACTCCGG 
CTCCGTTAGA GAATCCAGAA CTTCTCGACG GCAACTGGGT TTTGCTGTGC 
ACTGCTTTCT CTGAGTTGAT TCCTCTACTA GCTGCGGGTT CGACACCTTT 
GTTGAAAGTT AAAAGCATAA GTCAGTCAAT AGACACAAAC AATCTCATTA 
TCGACAACTC CACTACACTC TCCAGCCCTT TTGCAGACTT CTCCTTCAGT 
GCTACTGCTT CATTTGAAGT TCGAAGCCCT TCAAGAATTG AGGTTTCTTT 
CAAAGAAGGC ACGCTAAAAC CCCCGGTGAT CAAATCAAGT GTAGATCTCC 
CAGAGAGTGT GGGCGTCTTT GGGCAGCAGA TTAGCCTTTC GTTGTTAAAG 
CAGTCTTTGA ACCCCTTACA AGATGTGGCA GCAAACATTT CACGGGCACT 
CTCTGGTCAG CCACCTCTCA AGCTTCCGTT TCCAGGAAAC CGAGGCAGCT 
CTTGGCTCTT GACCACTTAT CTCGACAAGG ATCTCAGGAT TTCTAGAGGA 
GATGGTGGCC TTTTCGTGCT TGCCAGAGAA GGAAGCTCTC TGCTTGAGCT 
CTGAAATATT TGATAAAGTA TATATATAGC AGGCTTCATG TAAAAACCGT 
AACCACTACA GTAGAGACAT CTTCAGAATA ATGCTGAATG CAGATTATTG 
GGCCTAATCT TAAATTTTAA TTATGT

Gene models with high sequence identity

AT2G35490.1 [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
E-value: 0; Score: 99.92

InterPro Scan Digest

See the detailed result >

AT2G35490.1

Model type: Protein coding
Short Description: Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description: Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: fibrillin (TAIR:AT4G04020.1); Has 422 Blast hits to 421 proteins in 82 species: Archae - 0; Bacteria - 91; Metazoa - 1; Fungi - 0; Plants - 314; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link: InterPro Scan - TAIR