F10831

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10831

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F10831

Determination of introduced cDNA(s)

  • RAFL19-64-E04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-64-E04 - Resource: pda11406

    full reading [+] show sequence

    Nucleotide sequence: RAFL19-64-E04 - full reading 
    ATCCTTTGTT TCCCTTTTTC TTTCTCACTG TTTCTGCCTT ACTTAAAGTC 
    TCAATCTTTG CTTCAAATTC AACCCATCTC TTTTTCCTCC CTTCCCTCAC 
    AATCAAAATC TTAATTCTCA GCTTCTGGTT TTGTCGAAAA TGGAAGGCGG 
    TTCCGCTAGT GGATCGGCTT CGGCTTTGTC AAACGATGAA AATCTCGTCG 
    TTTCTTGTGA GGATTCTTCT TCTCCTATAG GGAATGAGCT TGAGCTTGGT 
    CTTACGTTGA GCCTTGGTCG CAAAGGGTAT CGAGATTGTA GGGTTTACGC 
    TGATGATTCT TCTTCTTCTT CATCATCTTC TTCTCTGAGC AGAGCTAGCG 
    TAATTGCTGG GATCAAGAGG ACAGCTGATT CCATGGCTGC AACTAGTGGG 
    CAAGTTGTGG GATGGCCACC AATAAGGACT TACAGAATGA ACAGTATGGT 
    TAACCAAGCT AAGGCTTCAG CCACTGAAGA TCCGAACTTG GAGATAAGTC 
    AAGCCGTAAA CAAGAATAGA AGTGATTCAA CAAAGATGAG AAATTCCATG 
    TTTGTTAAGG TGACTATGGA TGGCATTCCT ATTGGAAGGA AAATCGATCT 
    GAATGCTCAT AAATGCTATG AATCATTGTC AAACACTCTA GAGGAAATGT 
    TTCTGAAACC TAAATTAGGT TCACGCACAC TAGAAACCGA TGGTCACATG 
    GAAACACCGG TCAAGATACT ACCAGATGGG TCTTCCGGAT TAGTACTAAC 
    GTATGAAGAC AAGGAAGGAG ATTGGATGCT TGTTGGCGAT GTTCCGTGGG 
    GGATGTTTAT TGGTTCAGTG AGAAGGCTCC GGATAATGAA AACATCGGAG 
    GCTACTGGTA AAGCTCAGAT GATATTATGA AGCAAATAAT AATCTACGAA 
    GAACCCTTTA TGTTTGAAGC AGTAATAAGA CAGATCACAG ATCAAAGAGA 
    AGACAAAAAC ATTGTAAGAA GCTTCTTCTT CTTCTCTCCC CTTTACAGTT 
    TCTTTTTTGG CTCTGCCATT TTTCTTTTAG TTAGTTATAT GTTCTCTTTG 
    TAAATCACAC TTTAAAAATC TATAAGAAAA CCCTTTCTTG CAC

    Gene models with high sequence identity

    1. AT4G28640.1 [+] show detail - indole-3-acetic acid inducible 11
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Aux/IAA-ARF-dimerisation 32.54
    HMMPfam AUX_IAA 7.5e-51
    superfamily CAD & PB1 domains 1.9e-11

    See the detailed result >

    AT4G28640.1

    Model type
    Protein coding
    Short Description
    indole-3-acetic acid inducible 11
    Curator Summary
    Auxin induced gene, IAA11 (IAA11).
    Computational Description
    indole-3-acetic acid inducible 11 (IAA11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: auxin-induced protein 13 (TAIR:AT2G33310.2); Has 1971 Blast hits to 1970 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1971; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR