F11924

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11924

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11924

Determination of introduced cDNA(s)

  • RAFL06-10-C14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-C14 - Resource: pdz87572

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-10-C14 - 5 prime EST 
    GAAATTGACC CCAAAACCAA AAACAAATCA GAAGAAAATT AAAATAAACC 
    TAAAAGAGCA AATTTTTATT CGCATTGCTC TCAAAAATCA TCCATGGCGG 
    CCACCTCTAG CATCTCTTCT TCTCTATCTC TCAATGCTAA ACCCAACAAG 
    CTCTCTAACA ACAACAACAA CAATAAGCCT CACCGTTTCC TCCGTAATCC 
    CTTCCTTAAC CCCTCCTCCT CCTCTTTCTC TCCTCTTCCG GCTTCTATCT 
    CCTCTTCTTC TTCTTCTCCT TCGTTTCCGC TCAGAGTTTC AAACCCTCTT 
    ACCCTGTTGG CGGCAGACAA CGATGATTAT GACGAGAAGC CTCGGGAAGA 
    GTGNGGAGTT GTCGGAATCT ACGGTGACTC ANAAGCTTCA CGACTCTGTT 
    ACTTAGCTCT CCATGCGCTT CAGCATCGAG GTCAAGA

    Gene models with high sequence identity

    1. AT4G34740.1 [+] show detail - GLN phosphoribosyl pyrophosphate amidotransferase 2
      E-value: 0; Score: 99.54

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-10-C14 - 3 prime EST 
    GAGAGAAGAT TTGAATTCTT AACGAGACAA AAGTAAACAA AACCTTTCAA 
    AGATTCAGAC AAGAACAACC CTTAAATCTT AATCCATCCC AGACTCAATA 
    AAATAGTAAA AATGTGCCAG CAATTAAGGT CAAATGGAAC ACAAAATTCA 
    ACAAGATATC GTCATCATCT TACTCCATTA GTACCCAAAA TTGATCATCA 
    TAATGCAGAA CTTGAATATC TGCTATCTAC CGTACCCAAC CTCCTTCAAT 
    GTTGTGGATT CCTCCAACGA GACCATCATC GATAAAATCT CCTCCTCGCT 
    TCACCTTATC CTCTGTAGGC TTCACCGGAT AGTCCCCCGT GAAGCATGCA 
    TAGCAGAAGC TTCTAGAATC TTCCCCCAAA TGTTTCTTTA ACGTCTCAAA 
    CGACAAAAAC GCAAGGGAAT CACATCCGAT GTAATCCCTG ATTTCATCAA 
    CACTCATCCT ATTCGATATC AACTCATTTG AGCTAGGCGT GTCCACTCCG 
    TAGTAACAAG ATGCAATAAT AGGAGGACTC GCGATCCTCA TGTGAACCTC 
    TTTTGCACCC GCTTCTCT

    Gene models with high sequence identity

    1. AT4G34740.1 [+] show detail - GLN phosphoribosyl pyrophosphate amidotransferase 2
      E-value: 0; Score: 99.82

    AT4G34740.1

    Model type
    Protein coding
    Short Description
    GLN phosphoribosyl pyrophosphate amidotransferase 2
    Curator Summary
    Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage.
    Computational Description
    GLN phosphoribosyl pyrophosphate amidotransferase 2 (ASE2); FUNCTIONS IN: amidophosphoribosyltransferase activity; INVOLVED IN: purine base biosynthetic process, purine nucleotide biosynthetic process, leaf morphogenesis; LOCATED IN: plastid stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Phosphoribosyltransferase (InterPro:IPR000836), Amidophosphoribosyl transferase (InterPro:IPR005854), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: GLN phosphoribosyl pyrophosphate amidotransferase 1 (TAIR:AT2G16570.1); Has 21535 Blast hits to 21523 proteins in 2920 species: Archae - 630; Bacteria - 12403; Metazoa - 419; Fungi - 318; Plants - 251; Viruses - 17; Other Eukaryotes - 7497 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR