F11950

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11950

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F11950

Determination of introduced cDNA(s)

  • RAFL19-76-L24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-76-L24 - Resource: pda11567

    full reading [+] show sequence

    Nucleotide sequence: RAFL19-76-L24 - full reading 
    TCTTTCTCTC AAACACACAC CCACTCATGG CGTCTCGGAG AGTCTTATCA 
    TCTCTTCTCC GTTCATCTTC CGGTAGATCT GCCGCCAAAT TAGGCAACCG 
    TAACCCCAGG CTTCCTTCTC CTTCACCCGC GCGTCACGCC GCTCCATGTA 
    GCTACCTCCT CGGCCGCGTC GCCGAGTACG CGACCTCTTC ACCTGCAAGC 
    TCAGCTGCGC CATCTTCTGC TCCTGCTAAG GATGAGGGGA AGAAGACCTA 
    TGATTACGGT GGCAAAGGTG CGATCGGGCG TGTTTGCCAG GTCATTGGTG 
    CCATTGTCGA TGTGAGATTT GAGGATCAGG AAGGATTGCC ACCAATCATG 
    ACATCTCTCG AGGTGCAGGA TCACCCCACA AGGCTAGTGC TTGAGGTGTC 
    TCATCACTTG GGTCAGAATG TCGTCAGGAC CATTGCTATG GATGGTACTG 
    AGGGTCTCGT TCGTGGAAGG AAAGTCCTCA ACACTGGCGC TCCAATCACT 
    GTACCTGTCG GAAGGGCTAC TCTTGGACGT ATCATGAATG TTCTTGGAGA 
    ACCTATTGAC GAAAGAGGCG AAATTAAGAC CGAACATTAC TTACCTATTC 
    ACAGAGATGC ACCGGCTTTG GTTGATCTAG CTACTGGGCA AGAGATCCTG 
    GCCACTGGTA TTAAGGTTGT TGATCTTCTT GCTCCTTACC AAAGAGGAGG 
    AAAGATTGGT CTCTTTGGCG GTGCTGGTGT TGGGAAAACT GTGCTTATTA 
    TGGAGCTGAT CAACAATGTT GCCAAAGCTC ATGGTGGTTT CTCTGTGTTT 
    GCTGGTGTGG GAGAACGAAC CCGTGAAGGC AATGACTTGT ACAGAGAAAT 
    GATTGAGAGT GGTGTCATCA AGCTAGGCGA AAAGCAGTCT GAGAGCAAGT 
    GTGCTCTAGT GTACGGACAA ATGAATGAGC CCCCGGGTGC CCGTGCCCGT 
    GTTGGACTGA CTGGTTTGAC TGTTGCCGAG TATTTCCGTG ATGCTGAAGG 
    CCAAGACGTT TTGCTTTTCA TTGACAACAT TTTCCGTTTC ACTCAGGCCA 
    ACTCTGAAGT GTCTGCTTTA CTCGGTCGTA TCCCGTCTGC TGTGGGATAC 
    CAGCCAACTC TGGCTTCTGA TCTTGGTGCT CTTCAAGAGC GAATTACTAC 
    CACCAAGAAA GGGTCTATCA CCTCAGTCCA AGCCATCTAT GTACCTGCTG 
    ATGATTTGAC TGATCCTGCT CCTGCTACAA CTTTTGCTCA CTTGGACGCC 
    ACAACTGTGC TCTCAAGACA GATTTCTGAG CTTGGTATCT ACCCTGCTGT 
    GGATCCTTTG GATTCAACAT CCCGTATGCT GTCACCTCAC ATTCTGGGAG 
    AGGAGCATTA CAACACGGCT CGTGGCGTGC AGAAAGTTCT ACAGAACTAC 
    AAGAACTTGC AAGATATTAT TGCAATTTTG GGTATGGATG AGCTAAGTGA 
    AGATGACAAG TTGACTGTTG CCCGTGCCCG TAAGATCCAG AGATTCTTGA 
    GTCAGCCGTT CCACGTTGCT GAGATCTTCA CTGGTGCCCC TGGAAAATAT 
    GTCGACCTTA AAGAAAATAT CAACAGTTTC CAGGGTTTGT TGGATGGCAA 
    GTACGATGAT CTTTCCGAAC AATCGTTTTA CATGGTTGGA GGTATCGATG 
    AGGTGGTTGC AAAGGCAGAG AAGATCGCTA AAGAGTCAGC AGCTTAAGAG 
    ATTGATTCAG ATCTTTCATG CTTAATACTT CTCTTTTTTT TCCTGACAAT 
    AACGAAAAAA AAAAACCAAT GCGTGCGACT CTCCGACCAA ACGGAATCTG 
    AGTTCCGTAA TTATAGTTTC TTTTGGTTCA AATTCCATGA GAGCTGGCAA 
    GATGATACTG AACAGATCCA TTCACTGTTA ATCAAATTTT TGGTTGTTTT 
    GCTTCCTTTG TTGAAATAAA GATGAAAAAT CTTGCAGATC

    Gene models with high sequence identity

    1. AT5G08670.1 [+] show detail - ATP synthase alpha/beta family protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4e-24
    Gene3D no description 2e-98
    Gene3D no description 1.5e-51
    HMMPanther ATPase, F1 complex, beta subunit 2.3e-274
    HMMPanther ATP SYNTHASE 2.3e-274
    HMMTigr ATPase, F1 complex, beta subunit 1.4e-289
    HMMSmart ATPase, AAA+ type, core 5.1e-07
    PatternScan ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain, active site 0
    HAMAP ATPase, F1 complex, beta subunit 56.926
    superfamily P-loop containing nucleoside triphosphate hyd 3.9e-96
    superfamily ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal 2.2e-52
    superfamily ATPase, F1/A1 complex, alpha/beta subunit, N-terminal 7.4e-27
    HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain 2e-62
    HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal 2.4e-25
    HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal 1.6e-16
    HMMPfam ATP synthase, F1 beta subunit 1.8e-16

    See the detailed result >

    AT5G08670.1

    Model type
    Protein coding
    Short Description
    ATP synthase alpha/beta family protein
    Curator Summary
    Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.
    Computational Description
    ATP synthase alpha/beta family protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, copper ion binding, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, plasma membrane, chloroplast, mitochondrial respiratory chain complex I, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1 complex, beta subunit (InterPro:IPR005722), ATP synthase, F1 beta subunit (InterPro:IPR020971), ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATP synthase alpha/beta family protein (TAIR:AT5G08690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR