F12507

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12507

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12507

Determination of introduced cDNA(s)

  • RAFL06-16-I21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-I21 - Resource: pda03254

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-16-I21 - full reading 
    ACCATCCTCA TCTCTCAATC AACAAACCTA ACTCTTTCTC TATACAAGAG 
    CGCAAGCTCG AAGGCGCTCT TGTTCTTTCT TCATTTTCTC CTTAACAATC 
    ACCCTCATAG TAACTTTAAA ACTCTCTGTT TCTAGTAATT CACACACAAA 
    ATGGCTATTA AACTAGCAAT TCTATTTACC ACATTTGTTC TTTTTAGCCT 
    CGCCGACGCT AGAATCCCCG GTATTTACTC CGGCGGCGCA TGGCAAAACG 
    CACACGCCAC TTTTTACGGT GGCAGCGACG CCTCCGGCAC AATGGGAGGA 
    GCTTGTGGTT ACGGTAACCT ATACAGCCAA GGGTACGGGA CCAACACGGC 
    TGCTTTGAGT ACGGCGCTGT TTAACAATGG TATGAGTTGT GGAGCCTGCT 
    TTGAGCTAAA ATGCGCCAAC GACCCTCAAT GGTGTCACTC AGGTAGTCCT 
    TCGATCCTCA TCACCGCAAC CAATTTCTGC CCACCAAACT TGGCTCAGCC 
    TAGCGACAAC GGAGGATGGT GCAACCCACC ACGTGAACAC TTTGACCTAG 
    CCATGCCTGT CTTCCTTAAG ATCGCTCAAT ATCGCGCCGG CATTGTCCCC 
    GTCTCATACC GCAGGGTGCC ATGTAGAAAG AGAGGAGGCA TAAGGTTCAC 
    AATCAACGGT CACCGTTACT TCAACTTGGT TCTGATCACT AACGTGGCTG 
    GAGCAGGAGA CATCGTGAGG GCTAGTGTGA AAGGATCACG GACTGGTTGG 
    ATGAGTTTGA GCAGAAACTG GGGACAAAAC TGGCAATCTA ATGCTGTTTT 
    GGTTGGTCAA GCACTCTCTT TCCGTGTCAC AGGCAGTGAC CGTAGAACAT 
    CTACTTCCTG GAACATGGTT CCTTCTAACT GGCAGTTTGG TCAAACCTTT 
    GTCGGGAAGA ATTTCAGGGT TTAAGGCGAG TTTCGAGAAA CTAAAATTTG 
    GAGGAAATTC GAGAAATTAA AGTGGTTCGA GACAAAAGAA AACTCTCCGC 
    TAATTTCGCT ATTCCTCCTC CTTTTTTTTT ACTAAATTTT ATATATGGAA 
    AGGAGAGAAA AATCAGGGGA AAGTATCTTT GACTTTTGTG TGTGTTTTCA 
    CTTTTTTAAT GTTTTTTTTT TTGGGTTTGG TGTTTTAATT GTGAGTGATA 
    AAGGGGGAAA TGAGGGAGAA AGAGAAAGTG AGTAGCTGAA GTGGCTGTGA 
    GAACATTTTG TAACAGCCCG CAGCTATTAA AGTATTTTAC ATGGTTTGGT 
    TGTAAGTTAC AACTTGTAAC GTTTAATCTC GTGTAATCTT AAAACATGGT 
    TGTATC

    Gene models with high sequence identity

    1. AT2G39700.1 [+] show detail - expansin A4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Pollen allergen, N-terminal 4.2e-45
    Gene3D Pollen allergen/expansin, C-terminal 1.4e-10
    HMMPfam Pollen allergen/expansin, C-terminal 1.4e-25
    HMMPfam Rare lipoprotein A 6.9e-25
    ProfileScan Expansin 45, endoglucanase-like 31.536
    ProfileScan Pollen allergen/expansin, C-terminal 20.549
    FPrintScan Expansin 2e-82
    FPrintScan Expansin 2e-82
    FPrintScan Expansin 2e-82
    FPrintScan Expansin 2e-82
    FPrintScan Expansin 2e-82
    FPrintScan Expansin 2e-82
    FPrintScan Expansin 2e-82
    FPrintScan Expansin 2e-82
    FPrintScan Expansin 2e-82
    FPrintScan Expansin/Lol pI 5.6e-53
    FPrintScan Expansin/Lol pI 5.6e-53
    FPrintScan Expansin/Lol pI 5.6e-53
    FPrintScan Expansin/Lol pI 5.6e-53
    FPrintScan Expansin/Lol pI 5.6e-53
    FPrintScan Expansin/Lol pI 5.6e-53
    superfamily Barwin-related endoglucanase 5.3e-48
    superfamily Pollen allergen/expansin, C-terminal 1.4e-32
    HMMSmart no description 5.8e-58

    See the detailed result >

    AT2G39700.1

    Model type
    Protein coding
    Short Description
    expansin A4
    Curator Summary
    putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
    Computational Description
    expansin A4 (EXPA4); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A16 (TAIR:AT3G55500.1); Has 2158 Blast hits to 2155 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 41; Plants - 2085; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR