F12702

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12702

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F12702

Determination of introduced cDNA(s)

  • RAFL08-19-A04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-19-A04 - Resource: pda05009

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-19-A04 - full reading 
    AGAGAAGCGA TCAAAAAAAT CTTCATTAAA AGAACCCTAA ATCTCTCATA 
    TCCGCCGCCG TCTTTGCCTC ATTTTCAACA CCGGTGATGA CGTGTAAATA 
    GATCTGGTTT TCACGGTTCT CACTACTCTC TGTGATTTTT CAGACTATTG 
    AATCGTTAGG ACCAAAACAA GTACAAAGAA ACTGCAGAAG AAAAGATTTG 
    AGAGAGATAT CTTACGAAAC AAGATCAAAT GGACAGCAAA CAGATGTTGT 
    TGTCGGCGCT TGGCGTCGGA GTTGGAGTAG GTGTGGGTTT AGGCTTGGCT 
    TCTGGTCAAG CCGTCGGAAA ATGGGCCGGC GGGAACTCGT CGTCAAATAA 
    CGCCGTCACG GCGGATAAGA TGGAGAAGGA GATACTCCGT CAAGTTGTTG 
    ACGGCAGAGA GAGTAAAATT ACTTTCGATG AGTTTCCTTA TTATCTCAGT 
    GAACAAACAC GAGTGCTTCT AACAAGTGCA GCTTATGTCC ATTTGAAGCA 
    CTTCGATGCT TCAAAATATA CGAGAAACTT GTCTCCAGCT AGCCGAGCCA 
    TTCTCTTGTC CGGCCCTGCC GAGCTTTACC AACAAATGCT AGCCAAAGCC 
    CTAGCTCATT TCTTCGATGC CAAGTTACTT CTTCTAGACG TCAACGATTT 
    TGGACTCAAG ATACAGAGCA AATACGGCAG TGGAAATACA GAATCATCGT 
    CATTCAAGAG ATCTCCCTCA GAATCTGCTT TAGAGCAACT ATCAGGACTG 
    TTTAGTTCCT TCTCCATCCT TCCTCAGAGA GAAGAGTCAA AAGCTGGTGG 
    TACCTTGAGG AGGCAAAGCA GTGGTGTGGA TATCAAATCA AGCTCAATGG 
    AAGGCTCTAG TAATCCTCCA AAGCTTCGTC GAAACTCTTC AGCAGCAGCT 
    AATATTAGCA ACCTTGCATC TTCCTCAAAT CAAGTTTCAG CGCCTTTGAA 
    ACGAAGTAGC AGTTGGTCAT TCGATGAAAA GCTTCTCGTC CAATCTTTAT 
    ATAAGGTCTT GGCCTATGTC TCCAAGGCGA ATCCGATTGT GTTATATCTT 
    CGAGACGTCG AGAACTTTCT GTTCCGCTCA CAGAGAACTT ACAACTTGTT 
    CCAGAAGCTT CTCCAGAAAC TCAGTGGACC GGTCCTCATT CTCGGTTCAA 
    GAATTGTGGA CTTGTCAAGC GAAGACGCTC AAGAAATTGA TGAGAAGCTC 
    TCTGCTGTTT TCCCTTATAA TATCGACATA AGACCTCCTG AGGATGAGAC 
    TCATCTAGTG AGCTGGAAAT CGCAGCTTGA ACGCGACATG AACATGATCC 
    AAACTCAGGA CAATAGAAAC CATATCATGG AAGTTTTGTC GGAGAATGAT 
    CTTATATGCG ATGACCTTGA ATCCATCTCT TTTGAGGACA CGAAGGTTTT 
    AAGCAATTAC ATTGAAGAGA TCGTTGTCTC TGCTCTTTCC TATCATCTGA 
    TGAACAACAA AGATCCTGAG TACAGAAACG GAAAACTGGT GATATCTTCT 
    ATAAGTTTGT CGCATGGATT CAGTCTCTTC AGAGAAGGCA AAGCTGGCGG 
    TCGTGAGAAG CTGAAGCAAA AAACTAAGGA GGAATCATCC AAGGAAGTAA 
    AAGCTGAATC AATCAAGCCG GAGACAAAAA CAGAGAGTGT CACCACCGTA 
    AGCAGCAAGG AAGAACCAGA GAAAGAAGCT AAAGCTGAGA AAGTTACCCC 
    AAAAGCTCCG GAAGTTGCAC CGGATAACGA GTTTGAGAAA CGGATAAGAC 
    CGGAAGTAAT CCCAGCAGAA GAAATTAACG TCACATTCAA AGACATTGGT 
    GCACTTGACG AGATAAAAGA GTCACTACAA GAACTTGTAA TGCTTCCTCT 
    CCGTAGGCCA GACCTCTTCA CAGGAGGTCT CTTGAAGCCC TGCAGAGGAA 
    TCTTACTCTT CGGTCCACCG GGTACAGGTA AAACAATGCT AGCTAAAGCC 
    ATTGCCAAAG AGGCAGGAGC GAGTTTCATA AACGTTTCGA TGTCAACAAT 
    AACTTCGAAA TGGTTTGGAG AAGACGAGAA GAATGTTAGG GCTTTGTTTA 
    CTCTAGCTTC GAAGGTGTCA CCAACCATAA TATTTGTGGA TGAAGTTGAT 
    AGTATGTTGG GACAGAGAAC AAGAGTTGGA GAACATGAAG CTATGAGAAA 
    GATCAAGAAT GAGTTTATGA GTCATTGGGA TGGGTTAATG ACTAAACCTG 
    GTGAACGTAT CTTAGTCCTT GCTGCTACTA ATCGGCCTTT CGATCTTGAT 
    GAAGCCATTA TCAGACGATT CGAACGAAGG ATCATGGTGG GACTACCGGC 
    TGTAGAGAAC AGAGAAAAGA TTCTAAGAAC ATTGTTGGCG AAGGAGAAAG 
    TAGATGAAAA CTTGGATTAC AAGGAACTAG CAATGATGAC AGAAGGATAC 
    ACAGGAAGTG ATCTTAAGAA TCTGTGCACA ACCGCTGCGT ATAGGCCGGT 
    GAGAGAACTT ATACAGCAAG AGAGGATCAA AGAC

    Gene models with high sequence identity

    1. AT1G64110.2 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AAA-FAMILY ATPASE 4e-173
    HMMPanther AAA ATPASE 4e-173
    HMMPfam ATPase, AAA-type, core 1.3e-38
    Gene3D no description 4.1e-52
    Gene3D no description 2.6e-14
    superfamily P-loop containing nucleoside triphosphate hyd 4.9e-62
    superfamily P-loop containing nucleoside triphosphate hyd 5.1e-07
    HMMSmart ATPase, AAA+ type, core 2.6e-20
    PatternScan ATPase, AAA-type, conserved site 0

    See the detailed result >

    AT1G64110.2

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 45379 Blast hits to 42847 proteins in 3276 species: Archae - 1573; Bacteria - 21664; Metazoa - 5045; Fungi - 3902; Plants - 3254; Viruses - 30; Other Eukaryotes - 9911 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR