F12832

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12832

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12832

Determination of introduced cDNA(s)

  • RAFL09-69-A11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-A11 - Resource: pda06634

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-A11 - full reading 
    TGGACGAAGG AGAGAGAAAA TCCCTCCGAT TATATTCCGT ACAATCCGAT 
    CGATTTCCCG GCGCCAGATC TCACCGCGAC TCGTCTACTT TCCGATTTGG 
    TTCGTGTTGA CTCAGTTACG ATCTTCGTGT ACAAGCACCT TTAACCTGAT 
    GAATTCTGTA GATTAAACTA TGGATCCAAT GGATATAGTC GGCAAATCCA 
    AGGAAGACGC TTCTCTTCCA AAAGCTACGA TGACTAAAAT TATAAAGGAG 
    ATGTTACCAC CAGATGTTCG TGTTGCAAGA GATGCTCAAG ATCTTCTCAT 
    TGAATGTTGT GTAGAGTTTA TAAATCTTGT ATCTTCAGAA TCTAATGATG 
    TTTGTAACAA AGAGGATAAA CGGACGATTG CTCCTGAGCA TGTTCTCAAG 
    GCATTACAGG TTCTTGGTTT TGGAGAATAC ATTGAAGAAG TCTATGCTGC 
    GTATGAGCAA CATAAGTATG AAACAATGCA GGACACACAG AGGAGCGTGA 
    AATGGAACCC TGGAGCTCAA ATGACTGAGG AGGAAGCAGC AGCTGAGCAA 
    CAACGTATGT TTGCAGAAGC ACGTGCAAGA ATGAATGGAG GTGTTTCGGT 
    TCCTCAACCT GAACATCCAG AAACTGACCA GAGAAGTCCG CAAAGCTAAC 
    TGAAACCGTA AGGGTAAGTG TTAGGCAAGA AAAAACAACA TCCTTTTAAC 
    ATTCCCTTGT AAGTTGCAAA TGCGTATGTT CTCTGTTTAT ATGCTCTTAG 
    TATGATATAT GTTAGTTAGT GTTTCACGAT CTAAAAACAC TTGTGATTCA 
    GATGTAATTA GTAAGCATTC CTTGTTTTGT GTC

    Gene models with high sequence identity

    1. AT5G23090.1 [+] show detail - nuclear factor Y, subunit B13
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEI 2e-76
    HMMPanther CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2e-76
    HMMPfam Transcription factor CBF/NF-Y/archaeal histone 7.9e-22
    Gene3D Histone-fold 1.8e-39
    superfamily Histone-fold 2.9e-34

    See the detailed result >

    AT5G23090.1

    Model type
    Protein coding
    Short Description
    nuclear factor Y, subunit B13
    Computational Description
    "nuclear factor Y, subunit B13" (NF-YB13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.1); Has 1491 Blast hits to 1491 proteins in 242 species: Archae - 0; Bacteria - 0; Metazoa - 490; Fungi - 374; Plants - 520; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR