F12951

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12951

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12951

Determination of introduced cDNA(s)

RAFL05-14-L16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-L16 - Resource: pda17084

full reading [+] show sequence

GATCTCATCC TCTCACTCTC TCTCTCCTTT GGATTCTTCA GTGAGGAGAG 
GAAATGTCGG ATCTTCAGAC ACCGCTTGTG AGGCCCAAGA GGAAGAAGAC 
TTGGGTTGAT TACTTTGTCA AGTTCAGATG GATCATTGTC ATCTTCATCG 
TCCTTCCATT CTCAGCCACA TTCTACTTCC TCATCTACCT CGGGGACATG 
TGGTCAGAGT CCAAGTCCTT TGAGAAACGT CAGAAGGAAC ACGACGAGAA 
TGTCAAGAAA GTCATCAAAA GGCTTAAGGG TAGGGATGCT TCCAAGGACG 
GGCTTGTCTG CACTGCTCGT AAGCCCTGGA TCGCTGTTGG AATGAGGAAC 
GTTGACTACA AGAGAGCCCG GCATTTCGAG GTTGACTTGG GGGAGTTCCG 
TAACATCCTT GAGATCAACA AGGAGAAGAT GACTGCTAGA GTGGAGCCTC 
TTGTTAACAT GGGACAGATT TCCCGTGCTA CCGTCCCAAT GAACCTGTCT 
CTCGCTGTTG TTGCTGAGCT TGATGACCTT ACCGTTGGTG GACTTATCAA 
TGGATATGGT ATTGAAGGAA GCTCTCACAT CTACGGTTTG TTTGCTGATA 
CCGTTGAGGC TTACGAGATT GTTCTTGCGG GTGGAGAGCT TGTCCGCGCC 
ACAAGGGATA ATGAGTATTC TGATCTTTAC TACGCAATCC CGTGGTCGCA 
AGGAACTCTT GGACTCCTTG TAGCTGCTGA GATCAGGCTT ATTAAAGTCA 
AGGAGTACAT GAGACTCACT TACATACCAG TCAAGGGTGA TCTTCAAGCC 
TTAGCTCAAG GTTACATTGA TTCTTTTGCT CCCAAAGACG GTGACAAGTC 
GAAAATCCCG GATTTCGTCG AAGGCATGGT TTACAATCCA ACGGAAGGAG 
TGATGATGGT TGGAACATAT GCATCTAAAG AAGAGGCAAA GAAGAAAGGG 
AACAAAATCA ACAATGTGGG ATGGTGGTTC AAGCCGTGGT TCTACCAGCA 
CGCGCAGACC GCCCTGAAAA AGGGACAGTT TGTTGAGTAC ATCCCAACTC 
GTGAATACTA CCACAGGCAC ACAAGGTGCT TGTACTGGGA AGGGAAGCTT 
ATTCTTCCAT TTGGTGATCA GTTCTGGTTT AGGTACCTCT TAGGTTGGTT 
GATGCCTCCA AAGGTCTCTC TTCTTAAGGC CACTCAAGGT GAAGCTATCA 
GGAACTATTA CCATGATATG CATGTTATTC AGGATATGCT TGTTCCTCTT 
TACAAGGTTG GCGATGCACT CGAATGGGTC CACCGCGAAA TGGAGGTGTA 
TCCAATTTGG CTTTGCCCAC ACAAACTCTT CAAGCAGCCA ATCAAAGGCC 
AAATCTACCC AGAGCCAGGC TTCGAGTACG AAAACAGACA AGGAGACACA 
GAAGATGCAC AGATGTACAC TGATGTTGGA GTCTACTACG CACCTGGCTG 
TGTCCTAAGA GGTGAAGAGT TTGATGGATC AGAAGCAGTG CGTAGGATGG 
AGAAATGGCT GATAGAGAAC CATGGATTCC AGCCTCAGTA CGCGGTGTCT 
GAGCTCGACG AGAAGAGCTT CTGGAGAATG TTTAATGGTG AATTGTATGA 
GGAGTGCCGC AAGAAGTATA GAGCTATTGG AACGTTCATG AGTGTTTACT 
ACAAGTCCAA GAAAGGAAGG AAGACTGAGA AAGAAGTTAG AGAAGCCGAA 
CAAGCTCATC TCGAAACTGC TTATGCCGAG GCAGATTAAG TAATAATAAG 
CCTTGGTTTG ATGTAATGGC TCGGGATGAT TATTGTTATT CCTAGTAGTG 
TCTGTTATGT TGTTGTTTCC TAATTTCAGT TTTAGTGTCT TGAAGACTCT 
TGTTGTTGTT GTTTGCTTCT TGTTGTTGTT TGACTCATTC TGGTTTGAGT 
GGATTTTAGA GTTCAAAAAA AAAA

Gene models with high sequence identity

AT3G19820.2 [+] show detail - cell elongation protein / DWARF1 / DIMINUTO (DIM)
E-value: 0; Score: 99.95

InterPro Scan Digest

Program	Description	E-value
HMMPfam	FAD linked oxidase, N-terminal	1e-15
HMMPanther	CELL ELONGATION PROTEIN DIMINUTO-RELATED	4e-211
superfamily	FAD-binding, type 2	7.2e-28
Gene3D	FAD-linked oxidase, FAD-binding, subdomain 2	5.1e-06
ProfileScan	FAD-binding, type 2	11.964

See the detailed result >

AT3G19820.2

Model type: Protein coding
Short Description: cell elongation protein / DWARF1 / DIMINUTO (DIM)
Curator Summary: Involved in the conversion of the early brassinosteroid precursor 24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype. DWF1 is a Ca2+-dependent calmodulin-binding protein.
Computational Description: DWARF 1 (DWF1); FUNCTIONS IN: calmodulin binding, catalytic activity; INVOLVED IN: response to light stimulus, steroid biosynthetic process, unidimensional cell growth, brassinosteroid biosynthetic process; LOCATED IN: integral to membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), FAD linked oxidase, N-terminal (InterPro:IPR006094); Has 2747 Blast hits to 2744 proteins in 657 species: Archae - 35; Bacteria - 1665; Metazoa - 178; Fungi - 472; Plants - 176; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).
Link: InterPro Scan - TAIR