F13308

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13308

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13308

Determination of introduced cDNA(s)

  • RAFL05-16-H22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-H22 - Resource: pda07355

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-H22 - full reading 
    AACCTCCACC GCATTGATTC CTCTGCTTCC GGTTCAATGT CGCTGCTAAA 
    CCAACTCTTC AACCGTGGGA TCTTTGGCGC CAAATGCAAG ACAAGCTTGA 
    ACTTGGCGAT AGCTCGAATG AAATTGCTGC AAAACAAGAG AGATATGCAG 
    CTTAAACATA TGAAGAAGGA GATAGCTCAC TTCTTGCAAG CTGGACAAGA 
    ACCCATTGCT CGAATTCGGG TGGAGCATGT GATCAGAGAA ATGAATTTAT 
    GGGCAGCTTA TGAGATATTG GAGCTATTCT GCGAGTTTAT ACTTGCTCGT 
    GTTCCAATTC TTGAAAGTGA AAAGGAATGC CCGAGAGAGT TGAGAGAGGC 
    TATTGCTAGC ATTATCTTTG CTGCTCCAAG GTGCTCTGAA GTACCTGATC 
    TTCTTCAAAT AAAGAATCTG TTTGGTACAA AATATGGAAA AGAATTTATC 
    ATGGTTGCTT CTGAGCTTCG TCCGGATTCT GGTGTCAATC GTACTATCAT 
    TGAGAAGCTT TCTCCTACCA GTCCATCTGG AGCGGCAAGG CTCAAGATGT 
    TAAAGGAAAT TGCGCAGGAG TACAGTTTGA ATTGGGATTC TTCTGCCACG 
    GAAGCAGAGT TCATGAAGAG CCATGAAGAC CTACTGGGTG GAGCTAAGCA 
    AATACATCGT CAAGATGGTA TCTCTGAATC TCGACCGTCC CAACAAGGCT 
    ACGGTCAGTC TTCGGTTTCT AGGGAAGTTG AAAGTCTGCC TGCAGAGGCC 
    ACACAGAGAT TCCAAAAGCT TCAAGCTCAA AACCCAGTGA GCAAAAGCAT 
    GCCATCATCT AAGCTGACTT CAGCCTTTCA AGCTCCTCCT GATACTAGAC 
    GGAATCAGAC TGATGTAATG GAGATAGCTC GAGCTGCCCT AGCTAGCGCT 
    GATCGTGCAA CAGCAGCTGC TCGTGCTGCT GCGCAACTAG TGAATGTCTC 
    TTATGGGGCT ACTACACCCA CAGTAGCAGC AGAAGGGAAG CCCTTAAACT 
    TAATGTAGTT GCCACGTCGT CATTTGTGAA TAAAAGCAAC TGTATTTGCT 
    TCATACACAG AAAGAAGGAT AACGATGTTT AC

    Gene models with high sequence identity

    1. AT1G25420.1 [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MJK13.15 PROTEIN 4e-115
    HMMPanther UNCHARACTERIZED DUF292 4e-115
    HMMPfam Protein of unknown function DUF292, eukaryotic 1.6e-63

    See the detailed result >

    AT1G25420.1

    Model type
    Protein coding
    Short Description
    Regulator of Vps4 activity in the MVB pathway protein
    Computational Description
    Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G34220.2); Has 638 Blast hits to 625 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 157; Plants - 289; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR