F13829

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13829

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13829

Determination of introduced cDNA(s)

  • RAFL16-61-M06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-61-M06 - Resource: pdz88606

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL16-61-M06 - 5 prime EST 
    AACCGGAAAT TTTTCTTAGA GAAGAAGAAG AAGAAGCAAA ATGGCCACAA 
    GCGCATCAGC TTTGCTCTCA CCAACCACAT TCTCCACTGC AATCTCCCAC 
    AAAAACCCTA ACTCCATCTC ATTCCATGGC CTTCGTCCCC TCCGTCTAGG 
    TGGCTCCTCC TCCGCCCTAC CCAAACTATC AACCACCGGG AGAAAATCCT 
    CCTCCGCTGT CGTGAGAGCT GAGCTAAGCC CTTCCATCGT CATAAGTCTC 
    AGCACAGGTC TCTCCCTCTT CCTCGGCCGT TTCGTCTTCT TCAACTTCCA 
    GAGAGAGAAC GTAGCAAAAC AGGGCTTACC GGAGCAGAAC GGAAAAACCC 
    ATTTCGAAGC TGGAGATGAT CGTGCTAAGG AGTACGTCAG TCTCTTGAAA 
    TCGAACGATC CAATTGGATT CAACATTGTT GATGTTCTTG CTTGGGGTTC 
    TATTGGACAC ATCGTTGCTT ACTACATCTT GGCTACTTCC AGCAATGGAT 
    ACGACCCAAG CTTCTTTGGA TGATTCGTTT CAATGTCAAT CTCTCGTATA 
    TGTATATGTA TATGTTTGAC TTGTGTTGCA AGCTATCTAA TCTGNTCTCT 
    ATCTCTGGNT CTTCTTCTGN TG

    Gene models with high sequence identity

    1. AT1G55670.1 [+] show detail - photosystem I subunit G
      E-value: 0; Score: 99.51

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL16-61-M06 - 3 prime EST 
    GGATATATGA AATGAAGCGA ACTAATAAAG CTGGAACCAA CAACTCTGAA 
    ATCATTAAAG TCAGAAACAA AGTTCACCAA TATTCCATGT CTTCCAAATT 
    TCCCAATCTC TTCAGAAATA TCAGTATTGA CTTCAATTAA AGCTACAAAT 
    ATGTCTTAAA GATGCAATCA TCTTAATCAC AGAAAATACA AATATACACC 
    AAGATACACA TATTTGACCA CATAAGTCAT CGTGATTTTT AGTCCAACGA 
    CTCACTTACC CAAGTTAAAA CTAAAAGGTG TAACAGTAGG ACAAAAATTA 
    ATTGTAGTAT TGATATTTTG TCGACAAACA CCAAAAAAAT TCAACAGCTA 
    TTAACAGTAC AAAAGTGGGA AGACATGACA CATCAACTTG TGCTAC

    Gene models with high sequence identity

    Not founds.

    AT1G55670.1

    Model type
    Protein coding
    Short Description
    photosystem I subunit G
    Curator Summary
    Encodes subunit G of photosystem I, an 11-kDa membrane protein that plays an important role in electron transport between plastocyanin and PSI and is involved in the stability of the PSI complex. PSI-G subunit is bound to PSI-B and is in contact with Lhca1. The protein inserts into thylakoids by a direct or "spontaneous" pathway that does not involve the activities of any known chloroplast protein-targeting machinery. PSI-G appears to be directly or indirectly involved in the interaction between Photosystem I and plastocyanin.
    Computational Description
    photosystem I subunit G (PSAG); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic NADP+ reduction, photosystem I stabilization, protein stabilization, photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre, PsaG, plant (InterPro:IPR017494), Photosystem I PsaG/PsaK protein (InterPro:IPR000549), Photosystem I reaction centre, PsaG/PsaK, plant (InterPro:IPR016370); Has 117 Blast hits to 117 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR