F13845

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13845

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13845

Determination of introduced cDNA(s)

  • RAFL04-15-J04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-J04 - Resource: pda00504

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-15-J04 - full reading 
    GTCTCTCCTC TCTCTGTTTC TTTTCTTTTT GTTTCATTTT CTTATCTCCT 
    CACACTCTTC GAACAAGGAA GAACCCTAAT CTCAAGATGA ATAGGGAGAA 
    GTTGATGAAG ATGGCTAATA CCGTCCGCAC TGGCGGAAAG GGTACTGTCA 
    GAAGAAAGAA GAAGGCTGTG CACAAGACCA ATACAACTGA TGACAAGAGG 
    CTTCAAAGCA CTCTTAAGAG AATTGGAGTT AACTCCATTC CCGCTATTGA 
    AGAAGTTAAC ATCTTTAAGG ATGATGTTGT TATTCAGTTC ATCAACCCTA 
    AGGTTCAAGC TTCAATTGCT GCAAACACAT GGGTTGTTAG CGGTTCTCCT 
    CAGACCAAAA AATTGCAAGA TATCCTTCCT CAGATCATCA GCCAACTTGG 
    ACCAGACAAC ATGGACAACC TGAAGAAGCT AGCAGAACAG TTCCAGAAAC 
    AGGCTTCTGG TGAAGGTAAT GCCGCCTCAG CAACCATACA AGAAGAGGAT 
    GATGACGATG TCCCAGAGCT TGTTGGAGAG ACATTCGAAA CTGCTGCTGA 
    AGAGAAAGCA CCAGCTGCTG CTGCTTCTTC TTAGAGAGAA AAGAGCGAGA 
    CCACATCCAA AAAAAAACCG CACTTTGATT TTTACATATC TTTATAATAT 
    GTTTGTTCGC TCGATCCTTT TTGTAGTTTC CGACCAGAAT CTTGTTTTCC 
    ATCTAATGAC TTAAGGTTTT TATCAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT1G17880.1 [+] show detail - basic transcription factor 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Nascent polypeptide-associated complex NAC 15.897
    HMMPanther TRANSCRIPTION FACTOR BTF3 2.5e-64
    HMMPfam Nascent polypeptide-associated complex NAC 5.1e-19

    See the detailed result >

    AT1G17880.1

    Model type
    Protein coding
    Short Description
    basic transcription factor 3
    Computational Description
    basic transcription factor 3 (BTF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex NAC (TAIR:AT1G73230.1); Has 841 Blast hits to 841 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 427; Fungi - 178; Plants - 145; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR