F14217

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14217

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14217

Determination of introduced cDNA(s)

  • RAFL09-16-F04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-16-F04 - Resource: pda01908

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-16-F04 - full reading 
    AATTCATTTT TTGTTTGTTT TGGTTTAAAT AATTCAGTGT CTCACGAGCT 
    GTGTCGAGAT TGGATCCATA CAAAATCTGC ACGACGCCTG CTTCTTCACT 
    CTCTCCCACT GTTCCAGCTT CAACTCTCTT GATATACAGA GAGAGATAGA 
    GATAAAGAGA GAGAGAGTGA GAGTGATAGC TCTCGGAGAA ATTGAAGAAG 
    ACACAATCTG ATTAGTATTC TCCAATATTC CATCAACTTT TTGCTGAGGG 
    AAATCTCCAG ATTTATAATC GTTTGTATAT ATATATATAC AGAGCAGCGT 
    AGAAAAGGAT CTTAGATTTA TAGCAGCAAC AAAAAAATGT CAATGCCACT 
    ACAACGTGGC ATCTCTGGAG TACGAGTTTC TGATAGCAGT GATGATTTGA 
    GAGACTCTCA AATGAAAGAC AAAACTGAAA GAGCTCGTTC TACTGAGAAC 
    AACAACTTAA CCTTAAGGTT TCCTTTTGGT TTCCTCTTTA GTAATCAATC 
    TTCTTCCAAA CACGGTGGTG GTGGCGAAAA CGGTTTTTCT GCTGATCCAT 
    ATAGTGCAAG AAGCAGGCAT AGATTGATGT TGTTGTTTCT CAAGATCAGT 
    TTGGTTCTTA TTGTGGTTAT TGCTCTTGCT GGTTCTTTCT GGTGGACTAT 
    TTCCATTTCG ACTTCTTCCA GAGGTCATGT ATATCACAAT TATAGGAGGT 
    TACAGGAGCA GCTTGTTTCA GACTTATGGG ATATTGGGGA GATTTCTCTT 
    GGTCCTAATA GGTGGAAGGA GCTTGAATAT TGTAATATAG AATCTGAGAA 
    TTTTGTCCCT TGCTTTAATG TTTCTGAGAA TCTTGCTCTG GGTTACTCCA 
    ATGGTGATGA AAATGATCGG TTTTGTGGGC CTGGATCAAA GCAAGAATGT 
    TTAGAGTTGC CACCGGTGAA ATATCGAGTC CCTCTTAGGT GGCCGACTGG 
    TAAAGATATA ATCTGGCATT CTAATGTTAA GATTACTGCT CAAGAAGTTG 
    TGTCTTCTGG TAGCATAACC AAGAGGATGA TGATGATGGA AGATGATCAG 
    ATATCTTTCA GGTCAGCATC TCCTATGTCT GATGAGGTTG AAGACTATTC 
    CCATCAGATC GCTGAAATGA TCGGGATTAA GAAGGATAAC TTCATAGAAG 
    CTGGTGTGAG AACTATCTTG GATATTGGAT GTGGTTATGG TAGCTTTGGG 
    GCACATCTAT TGTCCAAACA GATTTTAACT ATGTGCATAG CAAACTACGA 
    AGCTTCGGGT AGCCAAGTTC AGCTAACACT CGAAAGGGGT CTTCCTGCAA 
    TGATTGGCTC TTTTATATCA AAGCAATTGC CATATCCTTC TCTTTCCTTT 
    GATATGTTGC ATTGCTTAAG ATGTGGCATT GATTGGGACC AGAAAGGTAA 
    CAGTTTAATG ACACCCCAGA ATGATTTTTT TCATGTCCTT AACCCGATGG 
    AAGATCCAAC TTTACTGTTT CAATCTGCTG TGTAGATGGG CTTCTCCTTG 
    TAGAAATTGA CAGGGTTCTC AAGCCCGGTG GTTACTTTGT ATGGACATCT 
    CCGCTCACAA ACCCTCGTAA CAAGGATCAT CTTAAAAGAT GGAACTTTGT 
    TCATGATTTT GCTGAAAGCA TCTGTTGGAC TCTTTTAAAT CAGCAAGATG 
    AGACAGTTGT CTGGAAAAAG ACTATCAACA CCAAATGTTA TAGTTCCCGG 
    AAACCTGGAG TGGGCCCTTC TGTGTGTACC AAAGGGCACG ATGTTGAGTC 
    TCCTTATTAC AGGCCGCTTC AGATGTGTAT AGGTGGAACA CGTAGCCGGA 
    GGTGGATTCC CATTGAAGGC AGGACAAGAT GGCCTAGCCG GTCTAACATG 
    AACAAGACTG AACTTTCATT ATATGGTCTT CACCCCGAGG TGCTTGGAGA 
    GGATGCTGAG AACTGGAAGA TAACAGTGAG AGAATACTGG TCTCTCTTGT 
    CTCCTCTGAT ATTCTCTGAT CATCCAAAAA GACCCGGCGA TGAAGATCCA 
    TCACCGCCTT ATAACATGCT CAGAAACGTA CTGGATATGA ATGCTCAATT 
    CGGTGGTCTC AATTCCGCCT TGTTGGAAGC AAGAAAATCA GTCTGGGTCA 
    TGAATGTGGT CCCTACAGCT GGACCTAACC ACCTCCCCAT GATACTTGAC 
    CGTGGCTTTG TCGGAGTTTT GCACAACTGG TGTGAACCAT TCCCGACTTA 
    CCCGAGAACA TATGACCTGG TACATGCAGA CAATCTCTTG TCGCTTCAGA 
    CAAGTCAGCC CCGAAAAACA TGTCTACTTA TTGATATATT CACAGAGATT 
    GACCGATTGC TTCGTCCAGA GGGATGGGTG ATAATCCGTG ACACGGCACA 
    GCTGGTGGAA AAGGCGAGAG AGACGATAAC GCAGTTGAAG TGGGAAGCTC 
    GAGTAATAGA GGTTGAAAGC AGCAGTGAAC AAAGACTTCT CATCTGCCAA 
    AAACCATTCA CCAAGCGACA ATCAATCTGA AGAAGAAGAA GAACATAGAC 
    ACAGGTTTTT CTCCACTTTT TTAATTTTTT TGTTCCAATG CCTCACATTT 
    TGGAATCAAA TCATCCAACT TGTGTTGGCG ATACGGGGAA GAAAGGAGGA 
    AGAGATGAAA TATATATCCC GCCGGGGACG TAAGACCGCC GGTGAAATTT 
    CTTTATCTGG TTCCGTGAGT TCCCATTTTA CAGAATCTAG ATTTTTTTTT 
    TCTTTACAAC TTTGGTTCTA TAACAACTCT TATTATACAG CGAAAAAAGA 
    ATATGATTCA ATATTTGTGA AGATGTTTAT GAAATAAGTT CAAAGCTTTT 
    TAGTAAATTT TCACTGAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT1G78240.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF248, methyltransferase putative 4.4e-49
    HMMPfam Protein of unknown function DUF248, methyltransferase putative 4.2e-85
    superfamily S-adenosyl-L-methionine-dependent methyltrans 8.1e-10
    superfamily S-adenosyl-L-methionine-dependent methyltrans 9.5e-09
    superfamily S-adenosyl-L-methionine-dependent methyltrans 0.00026
    Coil coiled-coil 0

    See the detailed result >

    AT1G78240.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Curator Summary
    Encodes TSD2 (TUMOROUS SHOOT DEVELOPMENT2), a putative methyltransferase with an essential role in cell adhesion and coordinated plant development.
    Computational Description
    TUMOROUS SHOOT DEVELOPMENT 2 (TSD2); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: shoot development, homogalacturonan biosynthetic process, response to cytokinin stimulus, root development; LOCATED IN: Golgi apparatus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 1 (TAIR:AT1G13860.3); Has 1228 Blast hits to 1207 proteins in 172 species: Archae - 9; Bacteria - 218; Metazoa - 0; Fungi - 44; Plants - 919; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR