F14744

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14744

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14744

Determination of introduced cDNA(s)

RAFL06-74-D24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-D24 - Resource: pda03481

full reading [+] show sequence

AAAAGATGGA AAAAGTTTTC TCCGACGAAG AAATCTCCGG TAACCATCAC 
TGGTCGGTTA ATGGAATGAC GTCGTTGAAT CGCAGTGCTT CCGAATGGGC 
ATTCAATCGT TTCATACAAG AATCCTCCGC CGCTGCAGAC GACGGAGAAT 
CTACGACGGC GTGTGGTGTT TCCGTCTCCT CTCCTCCTAA TGTTCCTGTA 
GATTCAGAGG AATACAGAGC ATTTCTCAAG AGTAAACTTA ATCTTGCTTG 
TGCTGCTGTC GCCATGAAAA GGGATACTTC TGGTAGATCT GACAATGGTG 
GAGCCAATGA ATCAGAACAA GCCTCTCTTG CTTCTTCCAA AGCTACACCA 
ATGATGAGCA GTGCTATAAC AAGTGGATCT GAGCTCTCTG GTGATGAAGA 
AGAAGCTGAT GGTGAAACTA ATATGAACCC TACTAATGTT AAACGCGTTA 
AAAGGATGCT CTCTAATAGA GAATCAGCTA GACGGTCCAG AAGAAGAAAG 
CAAGCACACT TGAGTGAGCT AGAGACACAA GTTTCACAGC TTCGTGTAGA 
GAATTCAAAA CTCATGAAGG GTCTCACTGA TGTAACTCAA ACATTCAATG 
ATGCATCTGT AGAAAACAGA GTTTTAAAAG CCAATATTGA GACACTACGA 
GCAAAGGTGA AAATGGCTGA AGAGACAGTG AAGAGACTCA CTGGCTTTAA 
CCCAATGTTC CACAATATGC CTCAGATTGT TTCAACTGTC TCTCTTCCTT 
CAGAGACATC AAATTCTCCA GACACTACAA GCAGCCAAGT GACTACACCA 
GAGATCATTA GCTCGGGGAA CAAAGGCAAG GCCTTGATAG GGTGCAAGAT 
GAACAGAACA GCTTCGATGC GTAGAGTTGA GAGCTTGGAA CATCTGCAGA 
AACGTATTCG AAGCGTTGGG GATCAGTAGC TGTTAAAGAA GAATCTTGAT 
TTGTAACATT AATCTTAAGA CATATGTTAA GACAAAATGT TGTATGTTTT 
TGTAAAGAAT TGTTTTTTCA GATTATTTAA ATTTTTTTTT GTCTTCTTCG 
TTGATTGTTT GTGTTGAACT TCTAATTTTC ATTGTACATG TCTTTTGTTA 
AATTTACAAA GTTTTTCG

Gene models with high sequence identity

AT5G28770.1 [+] show detail - bZIP transcription factor family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Basic-leucine zipper (bZIP) transcription factor	10.921
HMMPfam	Basic leucine-zipper, C-terminal	6e-21
HMMPfam	bZIP transcription factor, bZIP-1	5.5e-13
PatternScan	Basic-leucine zipper (bZIP) transcription factor	0
Gene3D	no description	1.6e-05
HMMSmart	Basic-leucine zipper (bZIP) transcription factor	1.5e-17
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPanther	TGACG-MOTIF-BINDING FACTOR	3.9e-06
HMMPanther	X-BOX TRANSCRIPTION FACTOR-RELATED	3.9e-06

See the detailed result >

AT5G28770.1

Model type: Protein coding
Short Description: bZIP transcription factor family protein
Curator Summary: bZIP protein BZO2H3 mRNA, partial cds
Computational Description: BZO2H3; FUNCTIONS IN: DNA binding, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), Basic leucine-zipper, C-terminal (InterPro:IPR020983); BEST Arabidopsis thaliana protein match is: basic leucine zipper 25 (TAIR:AT3G54620.1); Has 2647 Blast hits to 2627 proteins in 198 species: Archae - 0; Bacteria - 8; Metazoa - 224; Fungi - 122; Plants - 2188; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Link: InterPro Scan - TAIR