F14838

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14838

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14838

Determination of introduced cDNA(s)

  • RAFL05-16-F08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-F08 - Resource: pda02678

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-F08 - full reading 
    ACTTCACCCA AAACTCCAGA ACCCTAGAAT TCGAAATCTC CAAAGAACCC 
    GACAAAGCGC CATGTCGCTC ACTATCCCGG CGAATCTCGT TCTCAACCCG 
    AGATCTAACA AATCTCTCAC TCAATCCGTA CCTAAATCCT CCGCAAGATT 
    CGTCTGCTCC GATGACAAAT CCTCCTCCTC CACACCTCAA TCCATGAAAG 
    CTTTCTCCGC CGCCGTCGCC CTCTCTTCCA TACTCCTCTC TGCTCCTATG 
    CCAGCTGTCG CTGATATCTC AGGTTTGACT CCTTGCAAGG ACTCAAAACA 
    GTTCGCTAAA AGAGAGAAGC AACAGATCAA GAAGCTTGAA TCTTCTCTTA 
    AGCTCTACGC TCCTGAATCT GCCCCTGCTC TTGCTCTCAA TGCTCAGATC 
    GAGAAAACCA AACGCAGGTT CGACAACTAC GGGAAGTACG GATTGTTATG 
    CGGGTCAGAC GGTTTACCGC ACTTGATAGT GAACGGAGAC CAGCGGCATT 
    GGGGAGAGTT CATTACTCCA GGGATTCTTT TCCTCTACAT TGCTGGATGG 
    ATCGGGTGGG TTGGAAGAAG CTACTTAATA GCTATTAGTG GTGAGAAGAA 
    ACCCGCGATG AAAGAGATCA TCATCGATGT TCCTTTGGCT AGTCGGATCA 
    TCTTCCGTGG TTTCATTTGG CCCGTTGCTG CCTACAGAGA GTTTCTCAAT 
    GGTGATCTCA TTGCTAAGGA TGTTTAAAAA GGGAACTTGT TTTCTGCTTT 
    TGTGTTACTC TCTCTAATCT CTTTGTTTTC CATTGTACTT ATTGAAAAAC 
    AATGCATTGT CGAAAACCTT

    Gene models with high sequence identity

    1. AT1G31330.1 [+] show detail - photosystem I subunit F
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Photosystem I reaction centre protein PsaF, subunit III 3.9e-52
    superfamily Photosystem I reaction centre protein PsaF, subunit III 6.8e-54
    HMMPfam Photosystem I reaction centre protein PsaF, subunit III 1.4e-84

    See the detailed result >

    AT1G31330.1

    Model type
    Protein coding
    Short Description
    photosystem I subunit F
    Curator Summary
    Encodes subunit F of photosystem I.
    Computational Description
    photosystem I subunit F (PSAF); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre protein PsaF, subunit III (InterPro:IPR003666); Has 387 Blast hits to 387 proteins in 119 species: Archae - 0; Bacteria - 139; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 6; Other Eukaryotes - 163 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR