F15040

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15040

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15040

Determination of introduced cDNA(s)

  • RAFL06-07-F24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-F24 - Resource: pda17154

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-07-F24 - full reading 
    GACAATTCAG ATTCCAATTT TCTCAAACTC TAAAATCAAT CTCTCAAATC 
    TCTCAACCGT GATCAAGATG CAGATCTTCG TTAAGACTCT CACCGGAAAG 
    ACTATCACCC TCGAGGTGGA AAGCTCTGAC ACCATCGACA ACGTTAAGGC 
    CAAGATCCAG GATAAGGAAG GTATTCCTCC GGATCAGCAG AGGCTTATCT 
    TCGCCGGAAA GCAGTTGGAG GATGGCCGCA CGTTGGCGGA TTACAATATC 
    CAGAAGGAAT CCACCCTCCA CTTGGTTCTC AGGCTCCGTG GTGGTATGCA 
    GATTTTCGTT AAAACCCTAA CGGGAAAGAC GATTACTCTT GAGGTGGAGA 
    GCTCTGACAC CATTGACAAC GTCAAGGCCA AGATCCAAGA TAAGGAGGGT 
    ATTCCTCCGG ACCAGCAGAG GTTGATCTTC GCCGGAAAGC AACTTGAGGA 
    CGGCAGAACT TTGGCGGATT ACAACATCCA GAAGGAGTCT ACGCTTCATT 
    TGGTCTTGCG TCTGCGTGGA GGTATGCAGA TCTTCGTAAA GACTTTGACC 
    GGAAAGACCA TCACTCTTGA AGTTGAGAGC TCCGACACCA TTGATAACGT 
    GAAGGCTAAG ATCCAGGACA AGGAAGGCAT TCCTCCGGAC CAGCAGCGTC 
    TCATCTTCGC TGGAAAGCAG CTTGAGGATG GACGTACTTT GGCCGACTAC 
    AACATCCAGA AGGAGTCTAC TCTTCACTTG GTCCTCCGTC TCCGTGGTGG 
    TTTCTAAACC TTGTCTCTCT CTCTTATGGT TACTGAACCA AGTTCATGTA 
    TCGTTTCATC TAGTACTTTG GTGGTTTATG TTTTGGGGCC ATGTACAGCC 
    TCTGATAAAT AATTGATCGA CTATGTTTCC GTTTCTTTCA TCTCTCTTTT 
    CTTTCAAACA ACAAATCGAA CCAAAAAAAA AA

    Gene models with high sequence identity

    1. AT4G05050.1 [+] show detail - ubiquitin 11
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UBIQUITIN (RIBOSOMAL PROTEIN L40) 3e-153
    HMMPanther UBIQUITIN 3e-153
    ProfileScan Ubiquitin supergroup 30.452
    ProfileScan Ubiquitin supergroup 30.452
    ProfileScan Ubiquitin supergroup 30.452
    HMMSmart Ubiquitin 3e-35
    HMMSmart Ubiquitin 3e-35
    HMMSmart Ubiquitin 3e-35
    HMMPfam Ubiquitin 5.2e-34
    HMMPfam Ubiquitin 5.2e-34
    HMMPfam Ubiquitin 5.2e-34
    FPrintScan Ubiquitin subgroup 1.6e-38
    FPrintScan Ubiquitin subgroup 1.6e-38
    FPrintScan Ubiquitin subgroup 1.6e-38
    Gene3D no description 1.1e-30
    Gene3D no description 2.3e-30
    PatternScan Ubiquitin conserved site 0
    PatternScan Ubiquitin conserved site 0
    PatternScan Ubiquitin conserved site 0
    superfamily Ubiquitin-like 1.3e-34
    superfamily Ubiquitin-like 1.3e-34
    superfamily Ubiquitin-like 1.3e-34

    See the detailed result >

    AT4G05050.1

    Model type
    Protein coding
    Short Description
    ubiquitin 11
    Curator Summary
    polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene.
    Computational Description
    ubiquitin 11 (UBQ11); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 10 (TAIR:AT4G05320.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR