F15308

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15308

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15308

Determination of introduced cDNA(s)

RAFL09-06-L09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-06-L09 - Resource: pda05109

full reading [+] show sequence

ACACAATCAT AAACACAACA ACACTCACAA ATTCTCTTAA AGCTCACAGA 
CGAATTCTTT CTATTTTTAA TCTTTCCGGC GAACAATTCT GATCTCTAAT 
AATGGCGGGT AAAGGTGAAG GTCCAGCTAT CGGTATCGAT CTCGGTACAA 
CCTACTCTTG CGTCGGTGTT TGGCAACATG ACCGCGTCGA AATCATCGCC 
AACGATCAAG GCAACCGCAC CACTCCTTCC TACGTTGCTT TCACTGACAG 
CGAGCGTCTC ATCGGGGATG CTGCCAAGAA TCAAGTCGCC ATGAACCCTA 
CCAACACCGT CTTCGATGCT AAGCGTCTAA TCGGAAGAAG ATACAGTGAT 
CCCTCTGTTC AAGCGGATAA GAGTCACTGG CCTTTTAAGG TTGTTTCCGG 
TCCAGGTGAG AAGCCTATGA TTGTGGTTAA CCACAAGGGA GAGGAGAAAC 
AGTTCTCTGC TGAGGAAATC TCGTCGATGG TTCTTATTAA GATGCGGGAG 
ATTGCAGAAG CTTTCCTTGG TTCTCCTGTT AAGAACGCTG TCGTTACAGT 
TCCTGCTTAT TTCAACGACT CTCAGCGTCA AGCGACTAAG GACGCTGGAG 
TTATCTCTGG TCTCAACGTG ATGCGTATCA TCAATGAGCC AACTGCTGCT 
GCTATTGCTT ACGGTCTTGA CAAGAAGGCG TCGAGTGTTG GCGAGAAGAA 
TGTTTTGATC TTTGATTTGG GAGGTGGTAC TTTTGATGTG TCTTTGCTTA 
CGATTGAGGA AGGTATCTTT GAAGTCAAGG CAACTGCTGG TGACACGCAT 
CTTGGTGGTG AGGACTTCGA CAACAGGATG GTTAATCATT TTGTTCAGGA 
GTTTAAGAGG AAGAACAAGA AGGATATTAC TGGGAACCCG AGAGCTTTGA 
GGAGGCTTAG GACAGCTTGT GAGCGGGCGA AGAGAACTCT TTCTTCGACT 
GCTCAGACGA CTATAGAGAT TGACTCTCTT TTTGAGGGTA TTGATTTCTA 
CACTACCATC ACTCGTGCTA GGTTCGAGGA GCTCAACATG GATTTGTTTA 
GGAAGTGTAT GGAGCCAGTG GAGAAGTGTT TGAGGGATGC TAAGATGGAC 
AAGAGCAGTG TTCATGATGT TGTTCTTGTT GGTGGCTCTA CAAGGATTCC 
CAAAGTGCAG CAGCTTTTGC AAGACTTCTT CAATGGGAAA GAGCTCTGTA 
AAAGCATTAA CCCGGACGAG GCTGTTGCTT ACGGAGCAGC TGTGCAAGCT 
GCAATCTTGA GCGGTGAAGG GAATGAGAAG GTCCAGGACT TGTTACTTCT 
TGATGTCACT CCTCTGTCCT TGGGTTTGGA AACTGCCGGT GGTGTTATGA 
CTGTTTTGAT TCCGAGGAAC ACCACAATTC CGACCAAGAA AGAGCAGATA 
TTCTCTACCT ATTCAGACAA CCAGCCCGGT GTACTGATCC AGGTCTACGA 
AGGAGAGAGG GCACGAACAA AGGACAACAA CCTTTTGGGA AAGTTCGAGC 
TCAGTGGTAT ACCACCTGCT CCACGAGGTG TACCGCAGAT TACTGTCTGT 
TTCGACATCG ACGCCAATGG TATCCTGAAT GTGTCGGCTG AGGACAAGAC 
GACTGGTCAG AAGAACAAGA TCACAATCAC AAACGACAAG GGAAGGTTAT 
CAAAGGAAGA GATCGAGAAG ATGGTACAAG AGGCAGAGAA GTACAAGGCT 
GAGGATGAAG AACACAAGAA GAAGGTGGAT GCAAAGAACG CTCTCGAGAA 
CTATGCATAC AACATGAGGA ACACGATCAA GGACGAGAAG ATCGCATCTA 
AGCTTGACGC AGCTGACAAG AAGAAGATTG AGGATGCAAT CGACCAAGCT 
ATTGAATGGT TAGATGGGAA TCAACTGGCT GAGGCAGATG AGTTCGAGGA 
TAAGATGAAG GAGCTCGAGT CTCTTTGCAA CCCTATTATT GCAAGAATGT 
ACCAAGGAGC TGGGCCTGAT ATGGGTGGTG CAGGAGGAAT GGATGACGAC 
ACACCTGCTG GTGGTAGCGG CGGTGCTGGC CCAAAGATTG AAGAAGTTGA 
TTAAGCCTTT TGGCTTTTGT TTACTCTGTT TGCTTGAGAT TCTAGTTGGT 
TTCTTGTTCT TAGTTTTATC TTTCTATGTC ACTCTGAAAC TGGTGTGTGA 
TCATTTTGAT GCTTTAAGAA TTTAGCTTTA CCGTT

Gene models with high sequence identity

AT3G12580.1 [+] show detail - heat shock protein 70
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Heat shock protein 70	3.1e-276
HMMPfam	Glutamate dehydrogenase, NAD-specific	2.5e-19
HMMPfam	Glutamate dehydrogenase, NAD-specific	8.4e-77
HMMPfam	Glutamate dehydrogenase, NAD-specific	2.3e-20
Coil	coiled-coil	0
superfamily	Actin-like ATPase domain	8.2e-70
superfamily	Actin-like ATPase domain	3.7e-68
superfamily	Heat shock protein 70kD (HSP70), peptide-bind	1.8e-66
superfamily	Heat shock protein 70kD (HSP70), C-terminal s	4e-31
HMMPanther	HEAT SHOCK PROTEIN 70 (HSP70)	0
HMMPanther	Heat shock protein Hsp70	0
FPrintScan	Heat shock protein Hsp70	1.2e-87
FPrintScan	Heat shock protein Hsp70	1.2e-87
FPrintScan	Heat shock protein Hsp70	1.2e-87
FPrintScan	Heat shock protein Hsp70	1.2e-87
FPrintScan	Heat shock protein Hsp70	1.2e-87
FPrintScan	Heat shock protein Hsp70	1.2e-87
FPrintScan	Heat shock protein Hsp70	1.2e-87
FPrintScan	Heat shock protein Hsp70	1.2e-87
FPrintScan	Heat shock protein Hsp70	1.2e-87
Gene3D	no description	2e-49
Gene3D	no description	7.2e-32
Gene3D	no description	8.5e-77
PatternScan	Heat shock protein 70, conserved site	0
PatternScan	Heat shock protein 70, conserved site	0
PatternScan	Heat shock protein 70, conserved site	0

See the detailed result >

AT3G12580.1

Model type: Protein coding
Short Description: heat shock protein 70
Computational Description: heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink).
Link: InterPro Scan - TAIR