F16804

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F16804

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F16804

Determination of introduced cDNA(s)

  • RAFL05-14-B09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-B09 - Resource: pda01250

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-B09 - full reading 
    TGACTCGAAC CAAAACATAC ACACATAGCA AAAAATGGCA AACAAGTTGT 
    TCCTCGTCTG CGCAGCTCTC GCTCTCTGCT TCCTCCTCAC CAACGCTTCC 
    ATCTACCGCA CCGTCGTTGA GTTCGAAGAA GATGACGCCA CTAACCCCAT 
    AGGCCCAAAA ATGAGGAAAT GCCGCAAGGA GTTTCAGAAA GAACAACACC 
    TAAGAGCTTG CCAGCAATTG ATGCTCCAGC AAGCAAGGCA AGGCCGTAGC 
    GATGAGTTTG ATTTCGAAGA CGACATGGAG AACCCACAGG GACAACAGCA 
    GGAACAACAG CTATTCCAGC AGTGCTGCAA CGAGCTTCGC CAGGAAGAGC 
    CAGATTGTGT TTGCCCCACC TTGAAACAAG CTGCCAAGGC CGTTAGACTC 
    CAGGGACAGC ACCAACCAAT GCAAGTCAGG AAAATTTACC AGACAGCCAA 
    GCACTTGCCC AACGTTTGCG ACATCCCGCA AGTTGATGTT TGTCCCTTCA 
    ACATCCCTTC ATTCCCTTCT TTCTACTAAA TCTCAAACAA ACCCTCAAAG 
    CGTATGAGAG TGTGGTTGTT GATATATACA TGTTGACACT TGACACATAC 
    CACACCTCAT CGTGTGTTTT ATGATAAATG TAAGCTTTTG GATGTTTGAG 
    GGTAATGTAA GCACTACTTA ATAAATAAGA GTTTTGTTTA TATTTTTTTT 
    GTTGT

    Gene models with high sequence identity

    1. AT4G27140.1 [+] show detail - seed storage albumin 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 2.1e-11
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 4.8e-06
    Gene3D Bifunctional trypsin/alpha-amylase inhibitor 1e-29
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 9.7e-29
    FPrintScan Napin/ Bra allergen 7.4e-36
    FPrintScan Napin/ Bra allergen 7.4e-36
    FPrintScan Napin/ Bra allergen 7.4e-36
    FPrintScan Napin/ Bra allergen 7.4e-36
    FPrintScan Napin/ Bra allergen 7.4e-36

    See the detailed result >

    AT4G27140.1

    Model type
    Protein coding
    Short Description
    seed storage albumin 1
    Computational Description
    seed storage albumin 1 (SESA1); FUNCTIONS IN: lipid binding, nutrient reservoir activity; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, leaf apex, leaf; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: Bifunctional trypsin/alpha-amylase inhibitor (InterPro:IPR013771), Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Napin/ Bra allergen (InterPro:IPR000617), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: seed storage albumin 4 (TAIR:AT4G27170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR