F17119

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17119

Determination of introduced cDNA(s)

RAFL04-20-L13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-L13 - Resource: pda07221

full reading [+] show sequence

ATAGGAACTA AAGTGAATTG AGTCAGAGAA AAAGAGAAAG AGAGAAGGTA 
ACATGGATGC TTGTTTTCTT ACCTCAAGAT CAATCTCTGG TGTTAAAGAG 
CTTGTCCCGT TCATCAAAGC GAGAATCTTT ACTTGCCCCA AGAGAAATTC 
TGGCCAATTT GTTACCAGGA AGGTTGCTTC TCCGATCTCT GTAAATTGTT 
CTCTTTCGGA TTCATGGAAG CCACTGGAAG ATGATGCTGA TCTCTTCAAG 
GATTGTGTCA ACAATTCTAC ATCAGATGCT GATTGGAGGG AGTTCAGGGC 
AAGGCTTGTT GCAGGGGAAC AAGCTGCAAC GTCCGAGAAG GATCAGCCCT 
CGTGGTCTAA CCCGGACATG GTGGTGGACT ATCAGCCATC ATCGTCCTCA 
CTGATCACAA TTGGAAGCAA ATGGGCACAC AAGATCCATG AGCCAGAGAC 
AGGCTGCCTC CTAATCGCCA CAGAGAAGCT AGACGGTGTC CACATCTTCG 
AAAAGACGGT GATCCTCCTC CTCTCTGTTG GACCCTCAGG TCCTATAGGA 
GTCATCCTAA ACCGTCCATC TCTGATGTCT ATTAAGGAGA CCAAGTCAAC 
GATATTAGAC ATGGCAGGAA CGTTTTCAGA CAAAAGACTC TTCTTTGGTG 
GACCTTTGGA AGAAGGGTTG TTCTTGGTGA GTCCAAGGAG TGGTGGAGAC 
AACGAGGTTG GTAAGAGCGG AGTATTCAGA CAAGTGATGA AAGGATTGTA 
CTATGGAACG AGAGAGAGTG TAGGATTGGC TGCAGAGATG GTGAAGAGGA 
ATTTGGTTGG AAGAAGTGAG CTTAGATTCT TTGATGGGTA TTGTGGTTGG 
GAAAAAGAGC AGTTAAAAGC AGAGATCTTG GGAGGGTATT GGACTGTTGC 
TGCTTGTAGC TCCACTGTTG TTGAGCTTGG TTCAGCTGTC CAAAGTCATG 
GTCTTTGGGA TGAGGTTCTT GGGCTTATTG GGCCTCAAAC GGGCTCTGTT 
ATCTAAACCT TGTTTTTGTA CTGCATTTCA CTAATGGTTT ATGGTATGAC 
TATGTGTATG GTTTATCAAT GTACTGTATG TATTAAACAT CCATCACTAA 
TTTATG

Gene models with high sequence identity

AT3G29240.2 [+] show detail - Protein of unknown function (DUF179)
E-value: 0; Score: 100.00

InterPro Scan Digest

See the detailed result >

AT3G29240.2

Model type: Protein coding
Short Description: Protein of unknown function (DUF179)
Computational Description: Protein of unknown function (DUF179); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1); Has 1065 Blast hits to 1065 proteins in 382 species: Archae - 0; Bacteria - 730; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
Link: InterPro Scan - TAIR