F17135

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17135

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17135

Determination of introduced cDNA(s)

  • RAFL11-12-G09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-12-G09 - Resource: pda17997

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-12-G09 - full reading 
    CCCCAAAAAA AAATCCTCTG TATATGGATC TACACCTCTC CTCAGTCTCA 
    TACTCAAATC AATAATCCAA ACCCCAAAAA AAAGAAAACC AGAGAAGAGA 
    GTTTAAAAAA TGAGAGGTTC TTGCAAAGTC TCTATAGTTC TTCTTCTGGT 
    TTTAATCAAT GGTGTGCTTG GAGATAACCC TTATAGATTC TTCACCTGGA 
    AAATTACTTA TGGCGACATT TATCCCCTTG GTGTTAAACA ACAGGGAATA 
    TTGATAAATG GGCAGTTTCC TGGACCTCAC ATTGACGCAA TCACAAATGA 
    TAATATCATT ATCAGTGTTT TCAATTACTT GAAAGAGCCT TTTCTCATTT 
    CTTGGAACGG AGTGCAACAG AGGAAGAACT CATGGCAAGA TGGAGTCGTA 
    GGGACAACAT GTCCGATTCC ACCAGGCAAA AACTTCACTT ATGTAATTCA 
    AGTCAAAGAT CAAATTGGTA GCTTCTACTA TTTCCCTTCT CTTGCCTTCC 
    ACAAAGCCGC TGGTGCATTT GGAGCCATCC GTGTCTGGAG TCGTCCTCGC 
    ATCCCTGTCC CGTTCTCTCC CCCTGACGGT GATTTCTGGC TTCTCGCCGG 
    AGATTGGTAC AAAACCAATC ACTATGTTTT GAGACGTCTA CTAGAAGCCG 
    GAAGGAATCT ACCGAATCCT GATGGAGTTC TCATCAATGG TCGCGGCTGG 
    GGAGGCAATA CCTTCACCGT TCAACCCGGT AAGACCTATA GATTCAGAAT 
    ATCAAACGTT GGGGTCGCGA CTTCATTAAA CTTCAGAATC CAAGGACACA 
    CGATGAAGCT CGTTGAAGTA GAAGGCTCTC ACACTGTTCA AAACATCTAC 
    ACTTCACTTG ACATTCATTT AGGACAGTCT TACTCTGTTC TTGTGACGGC 
    TAACCAAGCT CCTCAAGACT ATTACATCGT CATCTCCTCG AGGTTCACGC 
    GGAAAGTCCT TACAACGACT TCGATTCTCC ATTACAGTAA CTCGAGAAAA 
    GGCGTATCTG GCCCTGTTCC AAATGGTCCT ACTTTGGACA TCGCATCTTC 
    ACTCTACCAA GCTCGAACTA TCCGGAGAAA TCTTACAGCG AGTGGTCCGA 
    GACCGAATCC GCAAGGCTCG TATCATTACG GTTTGATCAA ACCAGGCCGT 
    ACGATCATAC TCGCCAACTC AGCTCCTTGG ATCAACGGCA AGCAAAGGTA 
    CGCCGTGAAC GGTGCCTCGT TTGTTGCGCC TGACACACCA TTGAAGCTCG 
    CCGATTACTT CAAGATTCCC GGAGTTTTTA ACCTCGGAAG CATCCCAACG 
    AGTCCCTCTG GTGGAAACGG AGGGTATCTT CAAAGCTCTG TTATGGCCGC 
    TAACTTTAGA GAATTCATCG AGGTTGTTTT CCAAAACTGG GAAAATTCAG 
    TCCAGTCTTG GCACGTCTCC GGTTACTCTT TCTTCGTCGT CGGTATGGAT 
    GGAGGACAAT GGACTCCCGG AAGCCGAGCA AAGTACAACC TGCGGGACGC 
    GGTTTCACGG TCCACCGTTC AAGTATATCC GAGGGCATGG ACAGCGATCT 
    ACATAGCGTT GGATAATGTT GGGATGTGGA ACATAAGGTC GGAGAATTGA 
    GCAAGACAGT ATTTGGGGCA ACAATTCTAT CTTCGAGTTT ACACTTCCTC 
    TACTTCGTAC CGAGATGAAT ATCCACCACC AAAGAACGCT CTTATGTGCG 
    GACGAGCTAA AGGCCGCCAC ACTAGGCCAT TCTAAAAGGG ATATTGGACG 
    CAACGGCTCA ACTGTTTTTT TTTTCTTTGT TTTTTTAGAT TGAATGATTT 
    GAAATGTTTA GTATTGTCAC GAGAGGGTGG CAAAGAGATG TGAGCTTCGT 
    GGATTTATTC ACTACGGCAC AAAAATTAGG AACAAGAAAA ATTTGGAGCA 
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT4G22010.1 [+] show detail - SKU5 similar 4
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Multicopper oxidase, type 1 2.9e-41
    HMMPfam Multicopper oxidase, type 3 1.9e-35
    HMMPfam Multicopper oxidase, type 2 1.3e-23
    Gene3D Cupredoxin 1.1e-35
    Gene3D Cupredoxin 3.4e-46
    Gene3D Cupredoxin 1.6e-42
    superfamily Cupredoxin 6.8e-47
    superfamily Cupredoxin 9e-39
    superfamily Cupredoxin 1.1e-32
    HMMPanther PECTINESTERASE 1.7e-289
    HMMPanther MULTI-COPPER OXIDASE 1.7e-289

    See the detailed result >

    AT4G22010.1

    Model type
    Protein coding
    Short Description
    SKU5 similar 4
    Computational Description
    SKU5 similar 4 (sks4); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 5 (TAIR:AT1G76160.1); Has 5236 Blast hits to 5188 proteins in 961 species: Archae - 4; Bacteria - 1473; Metazoa - 274; Fungi - 2031; Plants - 1319; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR