F18005

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18005

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18005

Determination of introduced cDNA(s)

  • RAFL05-19-G09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-G09 - Resource: pdz87530

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-19-G09 - 5 prime EST 
    GGTGTCTTAT TTCGGTCTGG TCATTTTCTC AAAGCCCTTT TAGTTATTTA 
    TATATATATT CTCTGTCTCG TATTTGTCCC CAAAAATCTA GGGTTTTAAG 
    GTTTCTTATC CTTCCTCTTC CTCCGCCAGA TTCTTTTCTT GCGAAGATGA 
    GCAACGACAA GGACAGCATG AACATGTCCG ATCTCTCCAC CGCTCTTAAC 
    GAGGAGGATC GTGCCGGGCT TGTTAATGCT CTTAAGAACA AGTTGCAGAA 
    TTTGGCTGGA CAACACTCTG ATGTCCTTGA AAACTTGACT CCACCAGTCA 
    GGAAGCGTGT CGAGTTTCTA AGAGAGATTC AGAACCAATA TGATGAGATG 
    GAAGCCAAAT TCTTTGANGA GAGAGCAGCT CTTGAAGCTA AGTATCAAAA 
    GGTATATCAG CCTTTATATA CCAAGCGATA TGAGATTGTG AATGGTGTGG 
    TCGAAGTTGA AGGTGCAGCT NAGACAAGAA ANC

    Gene models with high sequence identity

    1. AT2G19480.3 [+] show detail - nucleosome assembly protein 1;2
      E-value: 0; Score: 99.36

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-19-G09 - 3 prime EST 
    GACCAGAGAA CGACATTAAC TCGAAACAAA TTCATAAGAT CATTACAAAA 
    GGAAAAATCA AGAGACACAA ACCAAACCAA AGAACCCATT TTTTTTTTTT 
    AAATAGCAAA CCAATCACCC AAAACTGATA TATAATAAAC CGGACCATGA 
    CTCTGCAAAT TAAAGAAACA CAACCTCGGC TCAAAGACAC TCTTCACTCT 
    TCTTCTTCAT CATAACTAAG CCAAGATTCT TCACTTCTTC ACTGCTGCTT 
    ACATTCCGG

    Gene models with high sequence identity

    1. AT2G19480.3 [+] show detail - nucleosome assembly protein 1;2
      E-value: 3e-145; Score: 100.00

    AT2G19480.3

    Model type
    Protein coding
    Short Description
    nucleosome assembly protein 1;2
    Curator Summary
    This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation.
    Computational Description
    nucleosome assembly protein 1;2 (NAP1;2); CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: nucleosome assembly protein 1;3 (TAIR:AT5G56950.1).
    Link
    InterPro Scan - TAIR