F19039

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19039

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19039

Determination of introduced cDNA(s)

RAFL05-12-E01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-E01 - Resource: pda02533

full reading [+] show sequence

ATCCACACAT AATCACGATG AAGCTCTTTG TTCATCTCTC TATCTTCTTC 
TCCATCCTCT TCATCACTCT CCCATCTTCT TACAGCTGCA CCGAAAATGA 
CAAGAATGCC CTCCTTCAAA TCAAGAAAGC ACTTGGCAAT CCTCCCCTTC 
TATCCTCCTG GAACCCCCGA ACCGACTGTT GTACCGGCTG GACCGGCGTC 
GAATGCACTA ACCGTCGCGT TACCGGTCTC AGCGTTACCT CCGGCGAAGT 
CTCCGGTCAG ATCTCGTACC AGATCGGCGA CCTCGTTGAC CTCCGTACAC 
TAGATTTCAG CTACCTGCCA CACCTCACCG GAAACATCCC ACGCACCATC 
ACCAAACTCA AGAACCTCAA CACTCTCTAC TTGAAGCACA CTAGTCTCTC 
CGGTCCGATT CCTGATTACA TCAGCGAGCT CAAGAGCCTC ACGTTCTTGG 
ACCTTTCTTT TAACCAATTT ACCGGTCCAA TTCCCGGTTC GCTATCTCAG 
ATGCCGAAGC TTGAAGCCAT TCAAATCAAC GATAATAAGC TAACCGGTTC 
TATACCAAAC TCTTTCGGTT CTTTTGTTGG CAACGTCCCT AATCTCTACT 
TGTCTAACAA TAAGCTGTCA GGAAAAATAC CGGAATCGTT GTCTAAATAC 
GACTTCAACG CAGTGGATTT GTCGGGAAAT GGTTTCGAAG GAGATGCCTT 
TATGTTCTTC GGACGGAACA AAACAACAGT ACGAGTGGAT TTGTCGAGAA 
ACATGTTTAA TTTCGATCTC GTCAAGGTTA AGTTCGCTAG AAGCATAGTT 
TCGTTGGATC TGAGCCAGAA CCATATCTAC GGGAAGATAC CACCAGCACT 
GACTAAACTA CACCTCGAGC ATTTCAACGT GAGCGACAAC CATCTCTGCG 
GAAAAATCCC AAGTGGCGGT CTACTTCAGA CCTTTGAACC ATCTGCCTTC 
GCTCACAACA TCTGTCTTTG TGGAACTCCC CTTAAGGCTT GTTAATTTGG 
TTTAATCTTG GCGGAAGAAT AAAAATAATG TTGAATATGT TATGATGATG 
TGTTCATTAT CACCGCCAAA CCAAGTTTAT TGTTTCTTTG TTATGAATTT 
AATTTAATGG CAAGAATTGG TTACGT

Gene models with high sequence identity

AT3G12145.1 [+] show detail - Leucine-rich repeat (LRR) family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Leucine-rich repeat	0.043
HMMPfam	Leucine-rich repeat	0.37
HMMPfam	Leucine-rich repeat	0.16
HMMPfam	Leucine-rich repeat-containing N-terminal domain, type 2	6.6e-14
HMMPanther	LRR RECEPTOR-LIKE KINASE	8.4e-55
HMMPanther	SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE	8.4e-55
superfamily	L domain-like	1.1e-61
Coil	coiled-coil	0
Gene3D	no description	6e-72

See the detailed result >

AT3G12145.1

Model type: Protein coding
Short Description: Leucine-rich repeat (LRR) family protein
Curator Summary: A novel leucine-rich repeat protein. Interacts directly with MADS domain transcription factor.
Computational Description: FLOR1 (FLR1); FUNCTIONS IN: enzyme inhibitor activity, transcription factor binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: polygalacturonase inhibiting protein 1 (TAIR:AT5G06860.1); Has 42601 Blast hits to 16185 proteins in 663 species: Archae - 31; Bacteria - 1045; Metazoa - 3045; Fungi - 233; Plants - 35461; Viruses - 0; Other Eukaryotes - 2786 (source: NCBI BLink).
Link: InterPro Scan - TAIR