F19138

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19138

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19138

Determination of introduced cDNA(s)

  • RAFL06-69-D04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-69-D04 - Resource: pda03319

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-69-D04 - full reading 
    AAAACCAAGT AACAAAAACC AAAACATTTG TATTATAAGA GTATTTTTAT 
    TGATACTATT TTTAAATTGT GCCCATACAT ATTACCTATA GGGAATGGCG 
    TCAACTATCA TCTTCATTCT AACTATTTTT TTAAGTTACA GAACTTCGCT 
    AGCTACATCT CGTGGTAGCC TTTTTGAAGC TTCTGCCATT GAGAAACATG 
    AGCAATGGAT GGCTCGATTC AATCGCGTTT ACTCTGACGA AACCGAGAAA 
    AGAAATCGGT TTAATATCTT CAAGAAGAAT TTGGAGTTCG TCCAGAACTT 
    CAACATGAAT AATAAAATCA CGTACAAGGT TGATATCAAC GAGTTCTCTG 
    ATCTTACGGA CGAAGAATTT CGGGCGACAC ACACTGGACT AGTTGTGCCC 
    GAGGCTATAA CCAGAATTTC AACTCTGTCT TCGGGCAAAA ACACGGTGCC 
    GTTTAGATAT GGTAATGTTA GTGATAATGG CGAGAGCATG GATTGGAGAC 
    AAGAGGGGGC TGTTACACCC GTTAAGTATC AAGGCCGATG TGGAGGATGC 
    TGGGCGTTTT CCGCGGTGGC GGCAGTGGAA GGCATTACAA AGATTACTAA 
    AGGCGAGCTT GTATCGCTAT CGGAGCAACA ACTCTTAGAC TGCGACAGAG 
    ACTACAATCA AGGATGTCGT GGAGGGATAA TGTCGAAAGC TTTCGAGTAC 
    ATAATCAAAA ACCAAGGCAT CACTACTGAG GATAACTATC CATACCAAGA 
    ATCACAACAA ACTTGTAGTT CATCAACTAC CCTATCATCG TCTTTTCGTG 
    CAGCCACAAT CAGCGGATAT GAGACCGTTC CAATGAATAA TGAGGAAGCG 
    TTGCTACAAG CAGTGTCTCA ACAGCCTGTT TCTGTGGGGA TAGAAGGGAC 
    AGGGGCCGCG TTTAGGCACT ACTCGGGAGG GGTATTCAAC GGAGAATGTG 
    GGACGGATTT GCATCATGCG GTTACAATTG TTGGTTATGG AATGAGTGAA 
    GAAGGGACTA AGTATTGGGT GGTGAAGAAT TCTTGGGGGG AAACTTGGGG 
    AGAAAATGGT TACATGAGGA TCAAGAGAGA CGTGGATGCA CCCCAAGGAA 
    TGTGTGGTTT GGCCATTCTT GCTTTCTATC CACTTGCTTG AATACATGAA 
    GATTGATTGG GTGGGCTTGA AGTAGTTGAA AGTATTCTGA TCAAAATGTT 
    ATTTTGAGAA ACATTATGGT CCCCATGTTT TCGTGCAAAT GGATTGATAT 
    ATATTTTTAA TCTGATGTGG GTAGAAGAAT AAAAGCACCA AGTAAAAGTT 
    TAAATTGCGA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT2G27420.1 [+] show detail - Cysteine proteinases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Proteinase inhibitor I29, cathepsin propeptide 1.6e-22
    HMMSmart Peptidase C1A, papain C-terminal 1.2e-113
    HMMPfam Peptidase C1A, papain C-terminal 1.4e-78
    HMMPfam Proteinase inhibitor I29, cathepsin propeptide 5.4e-16
    HMMPanther CYSTEINE PROTEASE 7.2e-182
    HMMPanther Peptidase C1A, papain 7.2e-182
    superfamily Cysteine proteinases 1.8e-102
    FPrintScan Peptidase C1A, papain C-terminal 5e-10
    FPrintScan Peptidase C1A, papain C-terminal 5e-10
    FPrintScan Peptidase C1A, papain C-terminal 5e-10
    Gene3D no description 7.9e-108
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0

    See the detailed result >

    AT2G27420.1

    Model type
    Protein coding
    Short Description
    Cysteine proteinases superfamily protein
    Computational Description
    Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G49340.1); Has 7920 Blast hits to 7848 proteins in 742 species: Archae - 67; Bacteria - 274; Metazoa - 3329; Fungi - 4; Plants - 1897; Viruses - 138; Other Eukaryotes - 2211 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR