F19427

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19427

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19427

Determination of introduced cDNA(s)

RAFL09-23-I08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-23-I08 - Resource: pda09674

full reading [+] show sequence

GTGATTCAAA GTTTTGATTT TTAGCTACCA ATCTATGAGT GAGTGACTGA 
GAAACAGAGA AGGATTCCAA GCTGCTAAAG ATTTTTTGTC AAGATTTTTA 
ATTTAAGTTT CCTGGAGGAG GAGATCACAG ATCTTCTTTT CATATGAAGA 
GATCTTTCCT TCTCTTGTAT GTGCTCCTGG TACAGGCCTT CTATGGGGCT 
TGGTGTAGTG TTGGAGAAAG CCTGCATTGT GAATATTCCA ATTTAGCGAG 
TCTTCACCGG CCTCACAGCG TATCGATTAC AGAGTTTGGA GCGGTTGGAG 
ATGGTGTGAC TCTAAACACT AAAGCCTTTC AGAATGCTCT GTTCTACCTC 
AATTCTTTCT CTGATAAAGG CGGGGCCAAG CTTTTTGTTC CCGCTGGTCA 
GTGGCTTACC GGGAGTTTCG ACCTTATCAG TCACCTCACC TTATGGCTAG 
ATAAAGGTGC AACGATTCTC GGGTCAACGA GCTCAGAGAA TTGGCCCGTG 
GTTGATCCAT TACCATCATA TGGACGAGGA AGAGAATTGC CCGGTAGAAG 
ACACAGAAGT CTTATATATG GTCAGAATCT CACAGATGTA GTCATAACAG 
GCGAGAACGG GACAATTGAT GGTCAAGGAA CTGTATGGTG GGATTGGTTT 
AGAAATGGAG AGCTTAACTA TACAAGACCT CATCTTGTTG AGCTCATGAA 
CTCTACTGGT CTGATCATCT CCAACCTCAC ATTCTTGAAT TCACCGTTTT 
GGAACATTCA TCCTGTTTAT TGCAGAGATG TTGTTGTAAA GAATCTCACA 
ATTTTGGCTC CTCTTGAATC TCCAAATACA GATGGAGTTG ATCCAGATTC 
ATCAACTAAT GTTTGCATAG AGGATTGTTA CATAGTTACC GGGGATGATT 
TGGTATCGAT AAAAAGCGGA TGGGATGAGT ATGGAATATC CTACGCAAGA 
CCGAGCTCCA AGATCAAGAT TAATCGGTTA ACAGGTCAAA CTACTTCAAG 
CTCAGGAATA GCAATAGGAA GTGAAATGTC GGGAGGTGTA TCCGAAATAT 
ACATTAAAGA CTTACATTTG TTCAATTCGA ATACTGGAAT CAGAATCAAG 
ACTTCTGCTG GAAGAGGCGG GTATGTTAGA AACGTTCACA TCTTGAACGT 
GAAGCTCGAT AATGTAAAGA AAGCGATTAG GTTCACCGGT AAGTACGGTG 
AACATCCTGA TGAGAAATAC GATCCCAAAG CACTCCCAGC TATAGAGAAA 
ATCACCTTTG AGAATGTAAA TGGCGATGGA ATAGGTGTTG CGGGTCTTCT 
TGAAGGTATA GAAGGAGATG TGTTTAAGAA TATATGTTTC CTTAATGTTA 
CTCTTAGAGT GAAGAAGAAT TCGAAGAAAT CACCATGGGA ATGCTCGAAT 
GTGAGAGGTT ATTCACAGTG GGTTTCGCCG GAAATTACTT GTGATTCTTT 
GAAAGAGAGT ATATTCCCGG AACATGGATC TGATTGTTTC GGGTTATCGG 
AAAATAATAT GGAGATATCA AGTGGTTTAA GTAGATCACC ATGGTTACTT 
TCTTGGTAAG TTACTGTGAA GTTTTGAACA TCAAAGGGGA AACACAGTTT 
GCTTGATTCT GAAGAAACCT CTTCGATTTT GAAAAATGAT GCTTTCTTTC 
ATCTTTTGTT GTTTTCGTGT AAATTTGTGT GCAGTGAGGA AAATAATCAG 
AGTGGCTTAA GAGTTTTTGT TTTTGTTTTC CTTGTATGGG CTTTAATGCT 
TTTGGTGAGC GGAACAATTG TAATATCTCC GACAGAGTCT GTTGAAATTT 
TTTGACGAAA AAAAAAAAAA AAAA

Gene models with high sequence identity

AT3G62110.1 [+] show detail - Pectin lyase-like superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Pectin lyase fold/virulence factor	8e-100
Gene3D	Pectin lyase fold	4.9e-105
HMMSmart	Parallel beta-helix repeat	2200
HMMSmart	Parallel beta-helix repeat	900
HMMSmart	Parallel beta-helix repeat	3000
HMMSmart	Parallel beta-helix repeat	480
HMMSmart	Parallel beta-helix repeat	810
HMMSmart	Parallel beta-helix repeat	1500
HMMPfam	Glycoside hydrolase, family 28	1.8e-43

See the detailed result >

AT3G62110.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G23500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR