F19445

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19445

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19445

Determination of introduced cDNA(s)

  • RAFL09-88-J18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-88-J18 - Resource: pda06920

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-88-J18 - full reading 
    AAAAACTCAG ACAACCACCG ATAACAAGAC AGTCGTTTCT CTCTCTCTTT 
    TAAACAAATA AAAATTGGAA CTTTTTTCCT CTGTCTTCTC AAAAAGTTTC 
    CGCTTTTTGC TCGCTGGAGA AGAAAGAAAG AAAGAAGTGA AAAGGAATCA 
    TTACCATGGC TGATCCGGCG ATTAAGCTCT TTGGAAAGAC GATTCCTTTA 
    CCTGAGCTTG GTGTTGTTGA TTCTTCTTCT AGCTATACCG GATTTTTAAC 
    CGAAACTCAG ATTCCTGTTC GGTTATCAGA TTCGTGTACC GGCGATGATG 
    ATGATGAAGA GATGGGTGAT TCCGGTTTAG GACGAGAAGA AGGTGATGAT 
    GTTGGTGATG GTGGAGGAGA GAGCGAGACT GATAAAAAGG AAGAAAAAGA 
    TAGTGAGTGT CAGGAAGAGT CATTGAGGAA TGAATCTAAT GATGTTACTA 
    CTACTACATC GGGTATAACT GAAAAAACGG AAACAACAAA AGCTGCAAAG 
    ACGAATGAAG AGTCAGGTGG TACTGCTTGC TCTCAAGAGG GGAAGTTAAA 
    GAAACCTGAT AAGATTCTAC CGTGTCCGCG ATGTAACAGC ATGGAAACCA 
    AGTTCTGTTA CTACAACAAC TATAATGTTA ACCAACCTCG CCATTTCTGC 
    AAGAAATGTC AGAGATATTG GACAGCTGGT GGAACGATGA GGAATGTTCC 
    GGTTGGTGCT GGGAGACGTA AGAATAAGAG TCCAGCTTCT CATTATAACC 
    GTCATGTAAG TATAACATCT GCGGAAGCTA TGCAGAAGGT GGCGAGAACT 
    GATCTTCAAC ATCCTAATGG TGCAAATCTT CTCACTTTTG GCTCTGATTC 
    TGTGCTTTGT GAATCTATGG CTTCTGGATT GAATCTTGTT GAGAAGTCAT 
    TGTTGAAGAC ACAAACTGTA TTGCAAGAAC CCAATGAAGG CTTGAAGATT 
    ACGGTTCCGT TAAACCAGAC AAACGAAGAA GCTGGAACAG TCAGCCCGTT 
    ACCAAAAGTT CCATGCTTTC CAGGACCACC ACCAACTTGG CCTTACGCTT 
    GGAACGGAGT TTCGTGGACG ATTTTACCGT TTTACCCTCC ACCGGCTTAC 
    TGGAGCTGCC CGGGGGTTTC ACCGGGGGCA TGGAACAGCT TCACATGGAT 
    GCCACAACCC AATTCACCAT CTGGTTCCAA TCCAAATTCT CCTACACTAG 
    GTAAACATTC ACGTGACGAG AACGCTGCTG AACCAGGAAC CGCTTTTGAT 
    GAAACCGAGT CACTTGGTAG GGAGAAAAGC AAACCCGAGA GATGCTTGTG 
    GGTTCCCAAG ACGCTGAGGA TTGATGATCC AGAGGAAGCT GCTAAAAGTT 
    CCATCTGGGA AACATTAGGG ATCAAAAAAG ACGAAAATGC GGATACTTTC 
    GGAGCTTTCA GATCATCAAC C

    Gene models with high sequence identity

    1. AT5G39660.2 [+] show detail - cycling DOF factor 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Zinc finger, Dof-type 1e-31
    HMMPfam Zinc finger, Dof-type 7.1e-37
    ProfileScan Zinc finger, Dof-type 28.612
    PatternScan Zinc finger, Dof-type 0

    See the detailed result >

    AT5G39660.2

    Model type
    Protein coding
    Short Description
    cycling DOF factor 2
    Curator Summary
    Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.
    Computational Description
    cycling DOF factor 2 (CDF2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: cycling DOF factor 3 (TAIR:AT3G47500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR