F19612

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F19612

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F19612

Determination of introduced cDNA(s)

  • RAFL09-39-N01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-39-N01 - Resource: pda08305

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-39-N01 - full reading 
    GTCTAAAAGA TTTCACAACT TTCGGTTTTG TCTCTAGGTG TATTATTCTT 
    CATCCCAAGG GCTACCCTGG TTATGATAAT CACTTGTCTC TATTTCTGAA 
    CGTACCTAAT CTTGAATCAT TGAGACTTGG ATGGAAAAGG AGAACTCGCT 
    TTTTCTTCGT TATTTTGAAT CAATCCGGCA ACGAGCTCTG CAGATCCCCT 
    AATGATCAAA GCTGTTTGTT CTGCGCTGAG GCTACACAAT GGGGTTTTCG 
    GAAGCTGTTG CCGCTTACCA AGCTTCTAGA AGACCACGAC AACAACAAGA 
    AACTAACCTT CCAAGTCCAC CTCGAAGTAG TCTAAGTTGT CCACCAAGGA 
    CAATCAACTG AGAATGATAT ATTACAACAC AGAGGTCTCC CGATCCTTGC 
    TTCTCAAGCT CTTTCATTTT CCAAAATTTT AAGTCGCCAC CCGGACTTTG 
    AAGTAGATTT CGTGCCAAAG TACCAGGAGC TACTACCAGT GTACTTGACT 
    CTCTTCTTCT GCCTCATCGA GACACTGAGC AAGTCTCCAC AGAGCTTGTC 
    TGCGGATGAA CTAACCAATG CTCAAAACCA ACTGTCCGAG CTCACAAAAG 
    TAGGCTTCAA GCTAGACTGG TTGAAGTCTA AGCTCGAGGA GCTTTCCTTG 
    GAGAGGAAGA AAGCAGTTCC CGATGCTTGT CATGTCCTCC ACGAACGGGT 
    CAAAAATGTG GAACTGACTT TGTCCAATCT CCAAGTTAAA CTGGACAAGG 
    ACAGGATCAA ATATGCTGCT GCTGCTGCTG GAGTTTCTTC CTTTGGGTTC 
    ATTGGTTTTT TTATCAAGAG ATTCGTTCTC TCTTGCTTCT CGGTCTGAAG 
    AAAGTATGCA ATTTACCAAA CTCAACTTAT AAAGAATACA CAAAAAAAAA 
    AAAAAAA

    Gene models with high sequence identity

    1. AT1G03580.1 [+] show detail - pseudogene, meprin and TRAF homology (MATH) domain protein -related, weak similarity to ubiquitin...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan MATH 0
    superfamily TRAF-like 3e-09
    HMMPfam MATH 0.016
    HMMPanther PTHR10420:SF29 1.79999754022378e-21
    HMMPanther PTHR10420 1.79999754022378e-21
    HMMSmart MATH 0.0339999972437717
    HMMPanther TRAF-LIKE AND MATH DOMAIN-CONTAINING 8.8e-22
    HMMPanther UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT 8.8e-22

    See the detailed result >

    AT1G03580.1

    Model type
    Pseudogene
    Computational Description
    pseudogene, meprin and TRAF homology (MATH) domain protein -related, weak similarity to ubiquitin-specific protease 12 (Arabidopsis thaliana) GI:11993471; contains weak hit to Pfam PF00917: MATH domain
    Link
    InterPro Scan - TAIR