F20302

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20302

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20302

Determination of introduced cDNA(s)

RAFL09-49-C15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-C15 - Resource: pda06413

full reading [+] show sequence

GTCTAATTCA TCGATGCCCA AACCAAAATT GAAAACTTTA TCCTCAAGAG 
ATTAGGAAAA TCTCATTCAT TATGTTAAAA ATCCCTTTTG GGGATTATAT 
TTATCAGAGA AAAAGATTCG AATTGAGTGT CTTCATGATT TGGGCAAAGC 
TAATCTGATC TTGCGGAGAC AACAACAAAA ATTGTCTGTT TTTTTTACCA 
ATTCGTAACG GAAAGTGTTC AAAGTTCCAA TCTTTGGATC CTCCGAGCAA 
AATCTCTATC TTTTCAATGG CGGATCATCA AGAAGACGAA GATTTGAAAT 
TGGCTCTTAA GATGAGTATG CAATACAATC CTCCTGAGCC AAAACGGAGC 
AAACCCATTG AAGAAGAAGA AACTGGATCC GGATCTCAAT CTGGTGGTGA 
ATCACCGGAG GCGAAATCTC GTCGGTTGCA GAGAGAGCTT ATGGCTGCTG 
CTGCTGAGAA GCGTATGGTT TTGTTTCCTA AGAGTCCTTC TCCTGTTAAC 
AAAGCTAGGG TTTTGCCAAT TAGTGTTGTT GGTGGTGATA AGGATGAGGA 
AGTTGTGGGA TCTTGTTTGG GGAAGGAGTT GTCTGTGGAA GAGTCTGATC 
AGTTGTTTTC GATTGTGTTT GGGAATGAGG TTTCGAAAAG TGTTCTTGCT 
CAATGGACTA ATCAAGGCAT AAGATTTAGC CCTGATCCTG AAACTACTAT 
AGGATTAGTG CAGCATGAAG GTGGGCCCTG CGGTGTTTTA GCAGCACTAC 
AAGCATTTGT TCTTAAATAC CTTCTTTACT TTCCGGGTGA CAGAGTAGCT 
TCCCCCTGTA TGGGTGTCTG GACATTATCT AAAGATCGTC ATGTTGTGTC 
TGACTCCTTC TCTTCTGTAA CTGAAGAAGC AAAAACAAAG GCCCTTGTCA 
GAAGTATGTG TGAGATTCTA TTTATGTGTG GAGACAACAA CCGCGCTGTA 
ATAGCAAGTT TCACTAATTT TGAGGATTCC AGTAGTAATC AAAAAGATGA 
GGCAATGGCT GGTGGGCTCC CCATTGAATC TGCTTCAGAT TTGCAGAAGA 
TCTTAAGGTT CGAGACATTC ACAACTCAAG CCAGTGCCCA AAATAAGCTA 
GAAGGCACAA TAACTGCTTT TCAAAGTCGC ATGGGTGCTT TGCTGTTCCT 
AATTTCTGCT TTACTCTCCC GAGGACTGGA TTCAGTTCAA GCCGACAGGG 
ATGATCCAAA CCTCCCCCTA GTAACTGCAC CATTTGGACA TGCCTCCCAG 
GAAATTGTAA ACCTGCTGCT GTGTGGAGAA GCGGTTCCTA ATGTATTTGA 
TGGACGGATG GATCTTGGAG GCGGCATGTT TCTGAAAGGC ATATCTAAGA 
ATGTAGATGT GGGCTTCCTC ACGTTGCTCG AGTCTCTCAA CTTCTGCAAA 
GTCGGTCAGA ATCTCAAATG TCCCAAATGG CCAATATGGG TTATTGGCAG 
TGAGTCTCAT TACACCGTCT TGTTTGCACT TGACCCATCC GTCCAAGAAG 
AAAACGAACT TGAGCTGAGA GAGTCTCAGA TAAGAAGAGC TTTCGATGCA 
AGAGACCAAA GCGGAGGAGG AGGTTTCATA ACTGTGGAGG CCTTTCACCA 
AGTTGCTCAG GAAACAAACA TCAGACTCCC AATCAAGAAG CTCGACGACA 
TCTGCGCCAC GGGTTTCATC GTGTGGAGCG AGTTATGGCA AGTTATCTTG 
GAACTAGACC AAAATTTGGG AGGGATAAAA GATGCAACAG GACTGATGGG 
AAAGAAAGTG TTTGATATCT ATCACTTCAA CGGAATTGCC AAGTCCGATA 
TAAACGGTGG TGGTCAAGCA ATGGCTGTGG AAGGTGGGAT GGTTCCTATG 
CAAAGGCCAA GGCTGACAAA ACTAAACGTA TCGGTTCCTC CAAAATGGAC 
ACCAGAAGAG TACATGACAT GTGCACTGCC GCCGAGCAGC TCTGAGAAAG 
ACTCAGAAGT GAATCAGCCA AAACCGGTCC AACATGCACC ACTGGTGGAT 
TGTATCAGAA CTCGGTGGTC GCGTGCCGCT TGTAGCTGGT CTGGAGATCC 
TCCAAGTATA GTCTGAAGAA TGTTGTATTA TGAGAAAGCT TGAGCGTTTA 
TTCTGGCTCA TTGGATTCTA AAGAAAGAAA ACGGAAACTG CTGATCTGAT 
TTGGCGGTTA ACACGCGTCT GAACTTTCTT TGCGTTGTCC GTTTTTTTCA 
TGTTGTGTAT TGATGTAGAA TTTTTGTTAT CTATTATTGA ACATTATTGA 
GACAAATGAA TATTTCAATT GTTGGATAAA ATTGCTTTCA AT

Gene models with high sequence identity

AT1G43690.1 [+] show detail - ubiquitin interaction motif-containing protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Ubiquitin interacting motif	9.192
HMMPanther	UNCHARACTERIZED	1.5e-89
HMMSmart	Ubiquitin interacting motif	0.0023

See the detailed result >

AT1G43690.1

Model type: Protein coding
Short Description: ubiquitin interaction motif-containing protein
Computational Description: ubiquitin interaction motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin interacting motif (InterPro:IPR003903); Has 368 Blast hits to 347 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link: InterPro Scan - TAIR