F20409

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20409

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20409

Determination of introduced cDNA(s)

  • RAFL09-87-G21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-87-G21 - Resource: pda06912

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-87-G21 - full reading 
    CCCAGCAGAT TTAGAGCGTG TGAGGGAGAT AGGAAGAGAG AAAGTGAGCG 
    AGAGACGATC ACGGCCGCGC TGAAATCCAC GACCACGGCC GCGCTGAAAT 
    CCACGACCAC GGCCGCTCTG AAGAAGAAGA CTCTCTCCGT CTCCTCCCTT 
    CTCCTCCTCC GTCTAAGAGA CAAGGCATCC CCAGACGCCA TGATCTCTCT 
    CACTCCCTCG TTGTTTCTGA ACAAGACGGT TGTTCCTGGA TGTTCCACAC 
    GCCTCTCTCT GCGCCAGCCT AGAACTATAA TTACTCCTCC TGCTTCCTTG 
    AGAGTCTTTT CCTCTCTCGG ATCTAACCAG GATCCCACCG GCAGCGTTTT 
    GATTGAGACC ACTGCCACTT CATCCTCCTC TCTCGAGACC TCCGCCGCCG 
    ACATTGTTCC CAAATCCACC GTATCTGGTG GAGTTCAGGA TGTCTACGGC 
    GAGGATGCCG CCACCGAGGA CATGCCTATC ACTCCTTGGT CTCTCTCTGT 
    CGCCAGTGGG TATACGTTGT TGCGTGATCC ACATCACAAC AAAGGCCTTG 
    CCTTTAGCCA CAGAGAGCGT GACGCTCACT ATCTACGCGG CCTCCTCCCC 
    CCCACTGTTA TCTCACAAGA TCTTCAGGTT AAAAAAATTA TGCACACTCT 
    TCGTCAGTAT CAAGTTCCCT TGCAGAAGTA TATGGCTATG ATGGATCTCC 
    AGGAGACCAA CGAGAGGCTG TTTTACAAAC TTCTCATTGA TCACGTCGAG 
    GAGTTGCTAC CCGTTATCTA CACTCCAACG GTTGGGGAAG CCTGCCAGAA 
    GTATGGTAGC ATTTTCCTGC GTCCACAGGG GCTTTTTATC AGCTTGAAAG 
    AAAAAGGTAA GATTCATGAA GTGCTGAGGA ACTGGCCTGA GAAGAACATC 
    CAGGTCATTG TTGTCACTGA TGGGGAGCGC ATTTTAGGGT TAGGAGATCT 
    TGGATGTCAG GGAATGGGAA TACCTGTTGG GAAACTTTCT CTCTACACAG 
    CCCTTGGAGG TGTCCGGCCA TCTGCCTGTC TGCCCGTAAC AATCGATGTT 
    GGGACAAACA ACGAAAAGCT ATTGAACGAT GAGTTCTACA TAGGGCTCCG 
    CCAAAGGAGA GCTACAGGAG AGGAATACTC CGAACTTATG CATGAATTCA 
    TGACAGCAGT CAAGCAGAAC TATGGGGAGA AAGTCGTTAT TCAGTTTGAA 
    GACTTTGCCA ACCATAATGC TTTTGATCTG TTAGCTAAGT ATGGTACAAC 
    ACATCTTGTT TTCAATGACG ATATTCAGGG CACAGCATCA GTTGTGCTTG 
    CTGGACTTAT CGCTGCTCTT AGATTTGTGG GGGGATCCTT GTCAGACCAC 
    AGATTCCTCT TCCTCGGGGC TGGAGAGGCT GGCACTGGAA TAGCTGAACT 
    AATTGCTCTT GAGATTTCAA AGAAGTCCCA TATTCCATTG GAAGAGGCTC 
    GGAAGAATAT TTGGCTCGTG GATTCAAAGG GATTGATTGT CAGTTCCCGG 
    AAAGAATCCA TTCAACATTT CAAAAAGCCC TGGGCTCATG ACCATGAACC 
    AATAAGGGAA CTTGTTGATG CCGTCAAGGC AATCAAGCCG ACAGTTCTGA 
    TCGGAACATC AGGTGTAGGT CAAACATTCA CTCAAGACGT GGTGGAAACC 
    ATGGCAAAGC TAAATGAGAA ACCCATCATT CTTTCTCTTT CGAACCCAAC 
    TTCTCAGTCA GAATGTACGG CAGAAGAGGC CTATACGTGG AGTCAGGGAC 
    GGGCGATCTT TGCAAGTGGA AGCCCATTTG CGCCAGTAGA GTATGAGGGA 
    AAGACGTTTG TGCCTGGACA GGCAAACAAC GCATACATCT TCCCTGGGTT 
    TGGACTCGGG CTAATAATGT CAGGGACGAT CCGTGTCCAT GATGACATGC 
    TTCTGGCAGC ATCAGAAGCT TTGGCTGAGG AACTGATGGA GGAACACTAT 
    GAGAAGGGGA TGATATACCC TCCCTTCAGG AATATCAGAA AAATCTCAGC 
    TCGTATTGCA GCTAAGGTGG CTGCCAAGGC CTACGAACTG GGACTGGCCA 
    CGAGGTTGCC TCAGCCCAAG GAGCTGGAGC AGTGTGCTGA GAGCAGCATG 
    TACAGCCCTT CGTATCGAAG CTACCGCTGA GGATAAGCTT AATCTAATTT 
    GTTATGTCTC ATACGACTCT TATGGCCATT TCTCTCCTCT CCTATTCGTT 
    CACCTTCCAC TTCCCGTGAG ATTTTTGTTT GTTTGTTTGT CAGCATCTTT 
    AAAATCTTGT GTTGTAATCA CTGTTTCCCT TGTTGTTTCT TTTTAAGTCC 
    GTAATAATCC TCCTATGGAA ATTGTTTCTC TGGGCC

    Gene models with high sequence identity

    1. AT1G79750.1 [+] show detail - NADP-malic enzyme 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 4.8e-108
    superfamily Aminoacid dehydrogenase-like, N-terminal doma 6.3e-105
    HMMPfam Malic enzyme, NAD-binding 2.3e-91
    HMMPfam Malic enzyme, N-terminal 4e-78
    Gene3D NAD(P)-binding domain 2.1e-94
    FPrintScan Malic oxidoreductase 2.5e-85
    FPrintScan Malic oxidoreductase 2.5e-85
    FPrintScan Malic oxidoreductase 2.5e-85
    FPrintScan Malic oxidoreductase 2.5e-85
    FPrintScan Malic oxidoreductase 2.5e-85
    FPrintScan Malic oxidoreductase 2.5e-85
    FPrintScan Malic oxidoreductase 2.5e-85
    PatternScan Malic enzyme, conserved site 0
    HMMPanther MALIC ENZYME 0
    HMMPanther MALIC ENZYME-RELATED 0

    See the detailed result >

    AT1G79750.1

    Model type
    Protein coding
    Short Description
    NADP-malic enzyme 4
    Curator Summary
    The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.
    Computational Description
    NADP-malic enzyme 4 (NADP-ME4); CONTAINS InterPro DOMAIN/s: Malic enzyme, NAD-binding (InterPro:IPR012302), Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NADP-malic enzyme 3 (TAIR:AT5G25880.1); Has 9573 Blast hits to 9553 proteins in 2441 species: Archae - 143; Bacteria - 6332; Metazoa - 610; Fungi - 220; Plants - 473; Viruses - 0; Other Eukaryotes - 1795 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR