F20531

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20531

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F20531

Determination of introduced cDNA(s)

  • RAFL05-15-L23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-L23 - Resource: pda03023

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-15-L23 - full reading 
    AACACAAAGA ATCATTTTAC CTCTAAAGCC AAAGACCAAC ATGTCTAATT 
    CAAACCAACC ACTTCTTTCC AAACCAAAGT CTCTTAAGCA CAAGAATCTA 
    TGCCTTGTCC TCTCCTTCGT AGCCATTCTT GGCTCTGTGG CTTTCTTCAC 
    AGCCCAATTA ATCTCCGTTA ACACCAACAA TAATGATGAT TCCTTATTAA 
    CTACGAGCCA GATTTGCCAT GGAGCTCACG ACCAAGACTC ATGCCAAGCT 
    CTCTTGTCCG AATTCACGAC GTTGTCGCTC TCAAAGCTCA ACCGCCTTGA 
    CCTATTGCAC GTGTTTTTGA AGAACTCGGT GTGGCGGCTT GAGAGCACGA 
    TGACCATGGT GAGCGAGGCT AGGATCCGCT CGAACGGTGT TAGAGACAAG 
    GCAGGTTTTG CTGACTGCGA GGAGATGATG GACGTATCAA AGGATCGGAT 
    GATGAGTTCG ATGGAGGAAC TTCGCGGAGG AAACTATAAT CTTGAGTCAT 
    ACTCAAACGT TCATACTTGG CTGAGCAGTG TGCTTACAAA CTACATGACA 
    TGTTTAGAAA GTATTAGTGA TGTCTCCGTC AACTCTAAGC AAATAGTCAA 
    GCCACAACTC GAGGACTTGG TTTCTAGGGC AAGAGTGGCT CTAGCCATCT 
    TTGTCTCCGT CTTGCCTGCC AGAGACGATC TCAAAATGAT CATTTCCAAT 
    CGCTTCCCGT CGTGGCTAAC TGCTCTTGAC AGAAAGCTTT TAGAATCTTC 
    TCCCAAGACA CTTAAGGTGA CCGCGAACGT TGTGGTGGCA AAAGACGGCA 
    CCGGAAAGTT CAAAACAGTG AATGAGGCAG TGGCGGCAGC ACCGGAGAAC 
    AGCAATACAA GATACGTTAT ATACGTAAAG AAAGGGGTTT ACAAAGAAAC 
    TATTGACATA G

    Gene models with high sequence identity

    1. AT1G11580.1 [+] show detail - methylesterase PCR A
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Pectinesterase, active site 0
    HMMTigr Pectinesterase inhibitor 4.6e-07
    HMMPfam Pectinesterase inhibitor 5.4e-26
    HMMPfam Pectinesterase, catalytic 6.7e-15
    Gene3D Pectinesterase inhibitor 0.00018
    Gene3D Pectin lyase fold 1.4e-11
    HMMSmart Pectinesterase inhibitor 1.4e-34
    superfamily Pectin lyase fold/virulence factor 3.9e-16
    superfamily Pectinesterase inhibitor 1.6e-12

    See the detailed result >

    AT1G11580.1

    Model type
    Protein coding
    Short Description
    methylesterase PCR A
    Computational Description
    methylesterase PCR A (PMEPCRA); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT1G11590.1); Has 3127 Blast hits to 3075 proteins in 484 species: Archae - 6; Bacteria - 913; Metazoa - 1; Fungi - 197; Plants - 1984; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR