F20711

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20711

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F20711

Determination of introduced cDNA(s)

  • RAFL05-07-K16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-K16 - Resource: pda01000

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-K16 - full reading 
    ACACATAAAC TCACTCTCAC TCTCTCACTG TCGGCAAACT AACTTATTCA 
    CTTTTCCGGC ACTGATTCTG CTCGGGAAAA ACAACTCCGG CACAAAATGC 
    AGCTTTTTCC AGTCATGTTA GCCACACTCT GCATTGTCCT GCAGCTTCTC 
    ATTGGCTCGT CAGCTTTGGC TACGACAAAT CGCCACGTGT CAAACTCTCA 
    TTGGCTTCCC GCAGTAGCTA CATGGTACGG AAGCCCCAAC GGTGACGGCA 
    GCGACGGAGG AGCGTGTGGT TACGGTACGT TGGTGGATGT GAAGCCGTTA 
    CATGCGAGGG TTGGAGCGGT GAATCCAATT CTCTTCAAAA ATGGTGAAGG 
    TTGCGGAGCT TGTTACAAGG TTCGATGCTT GGACAAGAGC ATTTGTTCCC 
    GGAGAGCCGT TACCGTCATA ATTACCGATG AGTGTCCCGG CTGCTCTAAA 
    ACCAGCACTC ACTTTGACCT CAGTGGTGCC GTCTTTGGCC GGTTAGCTAT 
    TGCCGGAGAG TCAGGGCCTC TCCGTAACCG TGGACTAATC CCAGTCATTT 
    ATCGCCGGAC TGCATGCAAA TATAGAGGGA AGAACATAGC ATTCCATGTG 
    AACGAAGGAT CAACTGATTT TTGGCTATCT CTGCTGGTCG AGTTTGAAGA 
    TGGAGAAGGA GACATTGGCT CCATGCACAT TCGCCAAGCA GGAGCCAGGG 
    AATGGTTAGA GATGAAGCAT GTATGGGGAG CCAACTGGTG CATCATTGGA 
    GGGCCACTCA AGGGACCATT CTCCATCAAG CTCACCACTT TGTCTGCCGG 
    TAAAACACTC TCTGCCACCG ACGTTGTCCC TAGAAACTGG GCTCCCAAAG 
    CAACTTACAG TTCCCGCCTC AACTTCTCCC CTGTCCTTTG AACCATCTCT 
    TCTACATAGT CAAAGACTAT TATAGTTCTA TTACTACTAC TACTCGTGTG 
    ATCGTTTTTT TTTAGAGAGA AACAGAGTGA CTGCTGGCCG TAGGATGGAA 
    ACAGTAAGAA AAGTACATCC GAATCAACGG CTATTGCGTT CTCTCCTCTT 
    CCTTCTTGTG ATGTGGATTT GTGTGTGTGT GATGTGTCGG TGAGTGTGTT 
    ATAGAAGTCA CTATAGCCAT CTTCAAAGGG GAGATAGAGC TAGGAGTAGT 
    ATTTGGTGGT GTCACGTCGT TTGTTTTTTC TATATAATTT TTGTCACTAG 
    AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT4G28250.1 [+] show detail - expansin B3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Pollen allergen, N-terminal 4.3e-42
    Gene3D Pollen allergen/expansin, C-terminal 2.6e-21
    HMMPfam Pollen allergen/expansin, C-terminal 4.8e-33
    HMMPfam Rare lipoprotein A 3.6e-19
    ProfileScan Expansin 45, endoglucanase-like 30.398
    ProfileScan Pollen allergen/expansin, C-terminal 22.016
    FPrintScan Expansin/Lol pI 3.5e-24
    FPrintScan Expansin/Lol pI 3.5e-24
    FPrintScan Expansin/Lol pI 3.5e-24
    FPrintScan Expansin/Lol pI 3.5e-24
    FPrintScan Expansin/Lol pI 3.5e-24
    FPrintScan Expansin/Lol pI 3.5e-24
    FPrintScan Major pollen allergen Lol pI 3.8e-13
    FPrintScan Major pollen allergen Lol pI 3.8e-13
    FPrintScan Major pollen allergen Lol pI 3.8e-13
    FPrintScan Major pollen allergen Lol pI 3.8e-13
    FPrintScan Major pollen allergen Lol pI 3.8e-13
    FPrintScan Major pollen allergen Lol pI 3.8e-13
    HMMSmart no description 1.2e-06
    superfamily Barwin-related endoglucanase 4e-40
    superfamily Pollen allergen/expansin, C-terminal 1.3e-28

    See the detailed result >

    AT4G28250.1

    Model type
    Protein coding
    Short Description
    expansin B3
    Curator Summary
    putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
    Computational Description
    expansin B3 (EXPB3); INVOLVED IN: response to cyclopentenone, syncytium formation, plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin B1 (TAIR:AT2G20750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR