F20938

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20938

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20938

Determination of introduced cDNA(s)

  • RAFL07-10-M06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-10-M06 - Resource: pda04102

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-10-M06 - full reading 
    CTCTTTTGTC GTCTCTCCCT GCTTTCGCAC TTCATAGCCT CAATCTCTCA 
    ACAAGCAGAA GAGATTCGAT TCTCCATTAT CTTCCTTCTA AATGCCTTCC 
    CTAATGTTAT CTGATAAGAA AGAGGAGAAG AAGATGAAGA AGAAGATGGC 
    TTTGGATACC CCAGAGCTTG ATTCTAAGAA GGGGAAGAAG GAGCAGAAGC 
    TGAAACTATC TGATTCGGAT GAAGAAGAGT CGGAGAAGAA GAAGAGTAAG 
    AAGAAGGATA AGAAGCGTAA GGCTTCCGAG GAGGAGGATG AAGTGAAGAG 
    CGATTCAAGC TCGGAGAAGA AGAAGAGCAG CAAGAAGGTT AAGTTGGGCG 
    TTGAGGATGT TGAAGTTGAT AACCCTAATG CTGTTTCTAA GTTTCGGATT 
    TCTGCGCCTT TGAGGGAGAA GCTTAAGGCG AATGGTATTG AAGCTCTTTT 
    CCCGATTCAG GCTTCCACGT TTGATATGGT TCTCGATGGT GCTGATTTAG 
    TTGGACGGGC TCGTACTGGT CAGGGTAAAA CATTGGCTTT TGTGTTGCCT 
    ATATTGGAAT CTTTGGTTAA TGGACCTGCC AAAAGCAAAA GGAAGATGGG 
    ATATGGCAGG TCACCAAGTG TTTTGGTCCT TTTACCGACC AGAGAATTGG 
    CCAAGCAGGT GGCTGCTGAC TTTGATGCAT ATGGAGGATC ACTTGGGTTA 
    AGTTCATGTT GTCTCTATGG AGGTGATAGC TATCCAGTTC AGGAGGGTAA 
    ATTAAAGAGA GGTGTTGACA TTGTAGTTGG AACCCCTGGT CGTATTAAGG 
    ATCATATTGA AAGACAAAAC CTTGATTTCA GCTATTTACA ATTCCGTGTT 
    CTTGATGAAG CTGATGAAAT GTTGAGGATG GGATTTGTTG AGGATGTTGA 
    ACTTATTTTA GGGAAAGTGG AGGATTCTAC TAAAGTCCAG ACTCTTCTCT 
    TCAGTGCTAC TTTGCCATCA TGGGTGAAAA ATATCTCTAA CAGGTTTCTT 
    AAAAGAGACC AGAAGACTAT TGATCTTGTT GGTAATGATA AAATGAAGGC 
    CAGTAATAGT GTTCGACACA TTGCTATTCC TTGTAATAAG GCAGCCATGG 
    CTCGGTTGAT TCCTGATATT ATCAGTTGCT ATAGCAGTGG AGGCCAAACT 
    ATTATTTTCG CTGAAACTAA AGTTCAAGTT TCTGAGCTTT CTGGTTTGTT 
    GGATGGATCA AGAGCCTTGC ATGGTGAAAT ACCTCAATCA CAACGTGAGG 
    TTACTCTTGC TGGATTTAGG AATGGCAAGT TTGCAACATT GGTGGCTACA 
    AATGTTGCTG CTCGTGGTCT AGATATCAAT GATGTGCAGT TAATTATCCA 
    GTGTGAGCCT CCACGTGAAG TTGAAGCATA TATTCATCGT TCAGGCCGAA 
    CAGGAAGAGC TGGCAACACA GGAGTTGCGG TTACACTCTA CGATTCTAGA 
    AAGTCGAGTG TATCCAGGAT CGAAAAAGAA GCTGGTATCA AATTTGAGCA 
    CCTTGCTGCA CCTCAACCTG ATGAAATTGC CAGATCTGGT GGTATGGAAG 
    CTGCTGAGAA AGTTAAACAA GTGTGTGACA GTGTGGTTCC TGCATTCCTT 
    GAAGCTGCCA AGGAATTATT AGAAACTTCT GGTTTATCAG CTGAAGTACT 
    CCTCGCAAAA GCTCTTGCAA AAACTGCGGG CTTCACTGAG ATAAAGAAAA 
    GGTCACTTCT TACATCAATG GAGAACTATG TGACACTACA TCTTGAAGCA 
    GGGAAACCAA TATACTCGCC ATCATTTGTT TATGGACTGC TAAGGAGAGT 
    TTTACCGGAT GACAAGGTGG AAATGATTGA AGGGTTATCT CTAACAGCAG 
    ATAAAACAGG AGCTGTGTTC GATGTTAAGC AATCAGATCT AGACTTGTTC 
    ATTGCAGGAG CACAAAAGAG TGCTGGAAGT ATGAGTTTGG AAGTGGTTAA 
    GGTGATGCCT AAACTCCAGG AGAGAGAACC ATTGCCACAA AAAAGATTCG 
    GTGGTGGTGG CAGAGGAAAT CGGTTTGGTG GTGGTGGAGG AAATCGGTTT 
    GGCGGTGGTG GTGGCAGAGG AAGAGGAGGC AGTGGTGGTA GAGGCCAGAG 
    ATATTGAAAA CTGGAACCCA ACTTCTCCTT TCTATATAAA AAGAAACTAA 
    ACTCCGTCTT ATAATTTCAT TACTATCTTC TTCCGCTGAT GTTTTCTACA 
    CTATAATAGG TGGCTTTTCT GTGTTTTCCA TTTTCTTTCC TTGAACAAAC 
    TTATGGAGGC TCTCTTGTAC CCTCTTATCA ATTTTGTGTA ATGTTGGATG 
    ATAATGATGA TTAAATTATA ACTTCGTCAC TCATTGGAAT TGTTTTGCAA 
    AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT5G62190.1 [+] show detail - DEAD box RNA helicase (PRH75)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 1.09999999999999e-40
    HMMPfam DNA/RNA helicase, C-terminal 3.90000000000001e-20
    ProfileScan DNA/RNA helicase, C-terminal 0
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 0
    HMMPfam GUCT 6.3e-30
    Gene3D G3DSA:3.40.50.300 3.10001307370189e-54
    Gene3D G3DSA:3.40.50.300 3.80000697093545e-34
    HMMPanther PTHR10967:SF22 0
    ProfileScan RNA helicase, DEAD-box type, Q motif 0
    superfamily SSF52540 1.8e-59
    superfamily SSF52540 1.5e-39
    HMMSmart DNA/RNA helicase, C-terminal 2.30000440726534e-24
    HMMPanther PTHR10967 0
    HMMSmart DEAD-like helicase, N-terminal 1.60000240695997e-49
    PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0

    See the detailed result >

    AT5G62190.1

    Model type
    Protein coding
    Short Description
    DEAD box RNA helicase (PRH75)
    Curator Summary
    DEAD/DEAH box RNA helicase PRH75
    Computational Description
    PRH75; FUNCTIONS IN: DEAD/H-box RNA helicase binding, ATP-dependent helicase activity; INVOLVED IN: RNA metabolic process; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), GUCT (InterPro:IPR012562), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase (RH3) (TAIR:AT5G26742.2); Has 57587 Blast hits to 49572 proteins in 3210 species: Archae - 795; Bacteria - 24538; Metazoa - 10953; Fungi - 6002; Plants - 4052; Viruses - 90; Other Eukaryotes - 11157 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR