F20947

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F20947

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F20947

Determination of introduced cDNA(s)

  • RAFL04-16-M08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-M08 - Resource: pda00567

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-M08 - full reading 
    AAGAAAATAA ATCAAAACAC ACATATAAAC ATCTGAATTC TCTTACAGGA 
    ACCGAACATG GAGTCATCAT CGTCGACTTT TCTCACCACG ACAAGCTTAG 
    ACAAGAAAAA ACCATCTCCG GTTTCAAGAA AATCACCAAA GCAAAAGAAG 
    AAGACGACTT CGACGAATAA ACCCATCAAA GTTCGTTACA TCTCAAACCC 
    CATGAGAGTT CAAACTTGTG CTTCTAAGTT CAGAGAGCTC GTTCAAGAAC 
    TCACAGGCCA AGACGCCGTC GATCTTCAAC CGGAGCCCAT CTATTCCCCT 
    TCCTCCGACG ACCACAACCT TTCTCCACCG GCGGAGAATC TTGCGCCACG 
    TGTTCTTCAT CAGGAGCCGT TCGGTGAGAG AGACAGTGAT TGTTATGAGC 
    CGTTGAATGC GGAAGACATG TTTTTACCTG ATCAGATGTC GGCAGGTTTT 
    TCTGGGTTTT TCTCTAATGG GTTTTACAAT GTCAATGACT TTGGAAGCAT 
    CGATTCTATG TGATAATCTT TCAGAGTTTT TATTAGGGGT TTCATCTAGT 
    AGATATATAT CATTATGATA TCGATACATA AATTTAACCC CCAAATTGAT 
    ACATGGATAT GTTAATTACT ATAGGGTTTG GGATGCGAAT TAGTATATGA 
    GTAAGTTGTT TTGTAAACAG TTTTTTTTTC TTAAATTTGT TTGTTTGTTT 
    TTTCTTACAT CAAAACTTCG GTAATGTATG AACATATTTT CTATTTAATC 
    AAGAAACATG TGATAATCTA AAGTTAGCGA TTAATAAGCC TTCAAGTTCA 
    TATTGAGTAT TTTCAT

    Gene models with high sequence identity

    1. AT3G56710.1 [+] show detail - sigma factor binding protein 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G56710.1

    Model type
    Protein coding
    Short Description
    sigma factor binding protein 1
    Curator Summary
    Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.
    Computational Description
    sigma factor binding protein 1 (SIB1); CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G41180.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR