F22004

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22004

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F22004

Determination of introduced cDNA(s)

  • RAFL06-81-A14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-81-A14 - Resource: pda03795

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-81-A14 - full reading 
    TCCGATTCAT CAACTGAGAG AGAAGAAGAA TTGAGAAATG ATGAAGCGTC 
    TGATCCCAAC GTTCAACCGC ATCTTGGTGC AGAGAGTCAT CCAGCCCGCT 
    AAAACCGAAA GCGGCATTCT CCTACCTGAG AAATCCTCCA AGCTGAACTC 
    AGGCAAGGTG ATAGCTGTTG GACCTGGATC AAGGGATAAG GACGGGAAAT 
    TGATTCCGGT CTCTGTGAAG GAAGGCGACA CTGTTCTTCT TCCAGAGTAC 
    GGTGGTACAC AGGTCAAGCT CGGCGAGAAC GAGTACCATC TCTTCCGGGA 
    CGAGGATGTT TTGGGAACTT TGCACGAGGA TTGAAAAGGC TAAGCTTGCC 
    AACTTAACCA CGAGGGTTCA TGTTGGTGTT TGTGTTATGA GGAGAAGTCA 
    TTTATAAATT AGTTTATCTT GAAGATGTGG TTGGACTTTG TTGTCGTTTA 
    TCATTGAATC TACCTTTATG AACCTGTCTT TGAATTTTTA CAAATGGGCA 
    TCAATCACAT GGATAACCCA AGTGTTGCAC CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G14980.1 [+] show detail - chaperonin 10
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Chaperonin Cpn10 8.8e-26
    HMMPanther Chaperonin Cpn10, subgroup 1.1e-47
    PatternScan Chaperonin Cpn10, conserved site 0
    superfamily GroES-like 1.8e-29
    FPrintScan Chaperonin Cpn10, subgroup 3.3e-16
    FPrintScan Chaperonin Cpn10, subgroup 3.3e-16
    FPrintScan Chaperonin Cpn10, subgroup 3.3e-16
    FPrintScan Chaperonin Cpn10, subgroup 3.3e-16
    HMMSmart Chaperonin Cpn10, subgroup 1.8e-35
    Gene3D Chaperonin Cpn10 3.1e-23

    See the detailed result >

    AT1G14980.1

    Model type
    Protein coding
    Short Description
    chaperonin 10
    Curator Summary
    Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.
    Computational Description
    chaperonin 10 (CPN10); FUNCTIONS IN: copper ion binding, chaperone binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: GroES-like family protein (TAIR:AT1G23100.1); Has 9195 Blast hits to 9085 proteins in 2839 species: Archae - 7; Bacteria - 6160; Metazoa - 328; Fungi - 119; Plants - 343; Viruses - 2; Other Eukaryotes - 2236 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR