F22407

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22407

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F22407

Determination of introduced cDNA(s)

  • RAFL09-21-F15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-21-F15 - Resource: pda05606

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-21-F15 - full reading 
    CTTTCAACGT TTGGAGTAGA GAGAGTTTGA CCTATTTGAA AGTCTCTGAG 
    ACCGGTGTGG CATGACGGTC GCGGCGGGTA TCGGCTACGC GCTGGTGGCT 
    TTAGGACCGT CTCTTTCACT TTTCGTCTCC GTCATCTCCA GAAAGCCCTT 
    TCTCATCCTC ACTGTTCTCT CCAGTACGTT GCTGTGGCTT GTGAGTCTGA 
    TCATCTTGTC GGGATTATGG AGACCATTTC TTCCTCTCAA AGCCAATGTG 
    TGGTGGCCTT ATGCTTTACT TGTTATCACC TCTGTTTGTT TCCAGGAAGG 
    CCTTCGCTTT CTCTTCTGGA AGGTTTACAA GAGGCTTGAG GATGTCTTGG 
    ATTCCTTTGC GGATCGTATC TCAAGGCCCC GCCTGTTTCT CACTGATAAG 
    CTGCAGATTG CTCTAGCTGG TGGTTTAGGT CATGGTGTGG CGCATGCTGT 
    ATTCTTTTGT TTGAGCCTCT TAACTCCAGC GTTTGGTCCA GCCACATTCT 
    ATGTCGAAAG ATGTTCGAAG GTGCCATTTT TTCTCATCTC TGCAATCATT 
    GCTCTTGCAT TTGTTACGAT CCACACATTC TCGATGGTCA TTGCTTTCGA 
    AGGGTATGCA AAAGGGAACA AAGTAGATCA AATAATAGTT CCAGTCATAC 
    ACCTTACTGC TGGAATGTTG ACATTGGTGA ATTTTGCATC GGAAGGTTGT 
    GTGATCGGGG TTCCTCTTCT TTACCTTGTG GCATCTTTGA CTCTTGTGCA 
    TTGTGGAAAA ATGGTTTGGC AAAGGTTGTT GGAAAGCCGG AACCAAAGCA 
    GCGCCTCACG GTAATCTGGC CTCGGTCTCA GAACAACAAT AGAACAGTCG 
    TTAATATCAT TTTATCTCAT GTCTTGGTTT CTTGCTTGCA AATCTCGTTC 
    GTCTTTATCT CCTAATTGCC TCGAAACTTA AACCCTTGTG TTTTAAAACG 
    CACTTATGAT CCTAAATTAT CAAAAAAAAA CTGAGGAAAT TTTATATCAC 
    TGAACCAAGA AATATTTCAG G

    Gene models with high sequence identity

    1. AT2G31440.1 [+] show detail - INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral ...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Aph-1 9e-77
    HMMPanther Aph-1 2.5e-90

    See the detailed result >

    AT2G31440.1

    Model type
    Protein coding
    Computational Description
    INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 268 Blast hits to 262 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR