F22415

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22415

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F22415

Determination of introduced cDNA(s)

  • RAFL06-09-E01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-E01 - Resource: pda02927

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-09-E01 - full reading 
    ATTGTTTTCT TCTCTCTATC CCTCTTCATT TCCTCTCTGA TCGCCAGTGA 
    TTTAGGCTTC TGCAACGAAG AGATGGCTTT AGTCGGAGGT GTTGGCGATG 
    TCCCTGCTAA TCAGAACAGT GGTGAGGTTG AGAGCCTCGC TCGTTTCGCT 
    GTCGATGAAC ACAACAAGAA AGAGAATGCA CTTCTTGAGT TTGCGAGAGT 
    TGTGAAGGCG AAAGAACAAG TTGTAGCCGG AACACTGCAT CACCTGACTC 
    TGGAGATTCT CGAGGCAGGA CAGAAGAAGC TTTACGAAGC CAAAGTGTGG 
    GTCAAGCCGT GGTTGAACTT TAAAGAGTTA CAGGAGTTCA AGCCTGCCAG 
    TGATGCCCCT GCTATCACTT CCTCCGATCT TGGCTGCAAG CAAGGTGAAC 
    ATGAATCTGG ATGGAGGGAA GTTCCCGGAG ATGATCCAGA AGTGAAGCAT 
    GTTGCTGAGC AGGCTGTCAA GACCATTCAG CAGAGGTCTA ACTCCTTGTT 
    CCCTTATGAA CTTCTGGAGG TTGTGCATGC TAAAGCTGAG GTAACCGGCG 
    AGGCTGCAAA ATACAACATG CTACTGAAGT TGAAGAGGGG AGAAAAAGAG 
    GAAAAGTTCA AGGTGGAAGT TCACAAGAAC CATGAAGGTG CTCTTCATCT 
    CAACCACGCG GAGCAACACC ATGACTAGTC CCTCTCCTTT GTTTATGTAC 
    TTTTGAGTGT TTACTTACTC TGTAAGATAT TTTAACTTCT GATGTAAAAC 
    TCTAAAACCT TAAATAACAA ATCAGGAGAA TAAATTAAGT T

    Gene models with high sequence identity

    1. AT3G12490.2 [+] show detail - cystatin B
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Proteinase inhibitor I25, cystatin, conserved region 6e-38
    superfamily Cystatin/monellin 2.7e-30
    superfamily Cystatin/monellin 2.4e-15
    HMMSmart Proteinase inhibitor I25, cystatin 7.1e-32
    PatternScan Proteinase inhibitor I25, cystatin, conserved site 0
    HMMPfam Proteinase inhibitor I25, cystatin 4.2e-16
    HMMPfam Proteinase inhibitor I25, cystatin 2e-07
    Gene3D no description 3.4e-38

    See the detailed result >

    AT3G12490.2

    Model type
    Protein coding
    Short Description
    cystatin B
    Curator Summary
    Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).
    Computational Description
    cystatin B (CYSB); FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity, cobalt ion binding; INVOLVED IN: response to abiotic stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved site (InterPro:IPR018073), Proteinase inhibitor I25, cystatin, conserved region (InterPro:IPR020381), Proteinase inhibitor I25, cystatin (InterPro:IPR000010); BEST Arabidopsis thaliana protein match is: Cystatin/monellin family protein (TAIR:AT5G05110.1); Has 755 Blast hits to 732 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 28; Fungi - 0; Plants - 721; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR