F22426

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22426

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22426

Determination of introduced cDNA(s)

  • RAFL09-19-F09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-F09 - Resource: pda07999

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-F09 - full reading 
    AAGCTGCTCA TAACAGAAAG TTCTGAAGAA CAAGAAGACG TTGAAAAAAG 
    AAAAAGAAAT CTTATATTTT GCTATATTGG CTTTTTGTCT AATTTGTAAG 
    GCTTTGATGT AACAGTCTCT CTCTCTCCTT TGAGCTGATT CGTCACTTGT 
    CCATAAACAA AGGAACCCAC CTTCCTCATT CTTCTTACCT ATTCCTTCTC 
    TTTGGTTTGG ACATTTGATT CTAGTTTATG TAATGGTTTC TTGATCTGAT 
    TTTTCTGGGT CTCTTGCCAT TTGGTGAAAC AGATCTTGGG TTTTGTTTCA 
    GATTCAGACA GGAAAATAAT CACCAATCTT TCTGACATCT TCTTAAGATG 
    TTGACGAGCC CTACTTTGAA GAGTTTATGG TTCTTGTTCA CTATTCTTGG 
    ACTCTTAGGA CAAAACCTCC CTTGTGTTCT GTCTAGTTCA CACCGTATTC 
    TAGTGGATAC AGATGTCGAC ACAGACGATT TATTCGCTAT ACTCTACCTC 
    CTGAAACTCA ACAAATCAGA ATTTGATCTA GTCGGGATTA CACTGAGTGC 
    AAATGCATGG ACAAACGCAG GACACGCCGT GAATCAAGTG TATGATTTAT 
    TGCACATGAT GGATCGTGAC GATATCCCCG TTGGTGTCGG CGGCGAAGGT 
    GGGATTAGCG ACGACGGTAC TATTCACTCT GACGTCGGTG GTTATTTTCC 
    CATCATCGAA CAGGGGATGA CAACAACAGG GGAATGTAGA TACAGACAAG 
    CCATTCCTAA AGGTCTTGGA GGCCTTCTCG ACATAGACTC CAATTATGGA 
    TTTCGTAAAC AGTTTCTTCC TCAGGGGAAC AGAAGATACA CTCCTCTCCA 
    ACAACCAACG GCACAAAAAG TGATCGTCGA CAAAATTTCC GAAGGTCCAA 
    CCACCGTAAT CCTTCTCGGA TCCCACACCA ATTTTGCACT CTTCTTGATG 
    TCAAATCCTC ACTTGAAACA CAACATCCAA CACATCTACA TCATGGGCGG 
    TGGTGTCCGA TCACAAAACC CCACCGGCTG TTGTCCGGCG AACTCCACGG 
    TGGCGGAATG TCAACCACGA CAGTGCGGGA ACCGTGGAAA CTTGTTCACA 
    GATTATACAA GTAATCCTTA CTCTGAATTC AACATCTTCG CTGATCCTTT 
    CGCTGCTTAC CAGGTGTTTC ATTCAGGTGT TCCAGTGACT CTGGTTCCTC 
    TAGATGCAAC CAACACTATT CCGATCAACC AGAAGTTCTT TGAGACATTC 
    GAGAATAATT ACCAGAGAAC ATACGAAGCT CAATACGTTT TCTTATCTCT 
    GAAAATCGCC AGAGACACTT GGTTCGACGA TGAATTCTAC AAGAGCTACT 
    TCATGTGGGA TTCTTTCACG GCTGGTGTTG CAGTCTCAAT CATGAGAAAC 
    TCTGCTAATA AGAACAACAA AAATGGTGAG AACGATTTCG CGGAGATGGA 
    GTATATGAAC ATAACCGTTG TTACTTCAAA CAAACCTTAT GGAAGATCAG 
    ATGGCTCAAA TCCATTCTTT GATAATAGAA GAACTCCAAA ATTTAACCTA 
    GCCCTTGGAG GAGTTCACAG TGGTCATGTT CAGACGGGTT TGCGAGATCC 
    AACTTGCTTA CCGAAAAGCG GAATAGGAAG AGGAAAGTGT AAGGATGGTT 
    ACACACAAGA GATCTCTGGT TCTGATTCTG TTCGTGTTCT TGTTGCGACA 
    CGAGCTAAAC CCAACATAAA CATCAAAAGT AAACTTGACA GAGAATTCTA 
    TGTTGATTTC CTGGAAGTTT TGAATAGACC TGAAGAAACA GGGAGATTTA 
    ACTTTTCATC TCAGTTTCCA TACTACAAAG AAGAATTGTT TAGACCAGAT 
    CTTAGCAAAA CACGTCCCGG AAAGCCTGTT GTTTTCGATA TGGACATGAG 
    CGCCGGAGAT TTCCTCTCTC TCTTCTACCT CCTCAAAGTT CCGGTGGATA 
    AAATCGATTT GAAGGCTATT ATTGTGAGCC CAACCGGTTG GGCTAATGCA 
    GCAACAATAG ACGTGGTCTA TGATCTGCTT CATATGATGG GTCGGGACGA 
    TATTCCAGTG GGCTTGGGAG ACATGTTGGC ATTGAACCAA TCCGACCCGA 
    TTTTTCCACC GGTTGGAGGT TGCAAGTACG TCAAGGCTAT TCCACGAGGC 
    TGTGGCGGAT TTCTGGATTC CGACACTCTC TACGGTCTTG CTCGTGACCT 
    TCCGAGAAGC CCTCGCAGAT ACACTGCAGA GAATTCAGTG ACACATGGAG 
    CTCCCAGGGA CACTGATAGG CCTGAACTCC GACAACCTCT GGCTATTGAA 
    GTTTGGCAAA ATCTGACCAA ATCTGGTAAT GGAGTGTCTA AGATCACTGT 
    ACTAACCAAT GGACCGTTAA CTAACTTAGC CAAGATTATC TCATCAGATA 
    AAAAATCATC CTCACTAATC AAGGAAGTTT ACATCGTGGG TGGACATATA 
    AACCGTGAGA AATCAGACAA AGGGAACATT TTCACGATTC CTTCAAATGC 
    ATATGCTGAA TTCAATATGT TTCTTGATCC TTTAGCAGCT AAGACCGTTC 
    TTGAATCCGC TCTAAACATC ACACTCGTCC CTCTAGCAAC ACAACACAAG 
    TTGAGTTCTT TCCAAACAAT GCTTGATAGA CTCTATTCCT CGACGAAAAC 
    ACCAGAAGCT CGGTTTGTGA AACGGTTGCT TGTAAGATTG CAAGCTCTTC 
    ATCAGAAACA CAGGAGATAC ACGCACATCG ACATGTTCTT AGGGGAAGTT 
    CTTGGAGCAG TTCTTTTGGG AGGCGATGAC GCTTCACTGA AGCCGAAAAT 
    GAGAGCCGAG CACATAAAAG TGATCGCGGA AGGGGATGAA TCGAGAGATG 
    GTAAGATATT GATCGATAAA CTGCGCGGCA AACAAATAAA GATACTCGAA 
    AGAGTAGACC TAATAAGCAT CTCTGAGAGT TTTGCTTCTA GACTCGATGA 
    TAAGAAACAA TCTGCAGTAA TAGGAAGCTT TGAAGAACAA AAGAAGATAT 
    GGAGCACACC ACCAAGCTGA CTGTTCAATA ATATGATTAT ATTATGTAAA 
    ATAATTACCA GATTATTTTA TATTCATTTC TGTTTCATTT GACTGTTTTC 
    TTATAGTTAT CCTTTTTCGT AGGATGATCA TTTTCTATTC ATTTGTGTTT 
    TTTTTACTGT TTTCTTTTCA CAATTTCTAT CCAATTTTTA AGGCGACAAG 
    CCAAATTGTA TTACGTGTTT GATGACGGAC TACATGATTA GTTCTAAATT 
    AAAAAAAAAT AAAAAAAAAA TATCAGC

    Gene models with high sequence identity

    1. AT5G18860.1 [+] show detail - inosine-uridine preferring nucleoside hydrolase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Inosine/uridine-preferring nucleoside hydrolase 1.5e-54
    superfamily Inosine/uridine-preferring nucleoside hydrolase 7.8e-47
    Gene3D Inosine/uridine-preferring nucleoside hydrolase 1.7e-46
    Gene3D Inosine/uridine-preferring nucleoside hydrolase 1.7e-45
    HMMPanther Inosine/uridine-preferring nucleoside hydrolase 9e-28
    HMMPfam Inosine/uridine-preferring nucleoside hydrolase 6.5e-52
    HMMPfam Inosine/uridine-preferring nucleoside hydrolase 1e-44

    See the detailed result >

    AT5G18860.1

    Model type
    Protein coding
    Short Description
    inosine-uridine preferring nucleoside hydrolase family protein
    Computational Description
    inosine-uridine preferring nucleoside hydrolase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: Inosine-uridine preferring nucleoside hydrolase family protein (TAIR:AT5G18890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR